Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19416 | Canola | nucleus | 99.46 | 99.46 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 80.0 | 67.89 |
| Bra019794.1-P | Field mustard | nucleus | 98.92 | 43.06 |
| CDY21073 | Canola | nucleus | 91.89 | 39.44 |
| CDY34601 | Canola | nucleus | 91.89 | 38.29 |
| AT1G12860.1 | Thale cress | nucleus | 91.89 | 37.78 |
| CDY28529 | Canola | nucleus | 87.03 | 36.67 |
| Os01t0928000-01 | Rice | nucleus | 75.14 | 36.48 |
| EES04142 | Sorghum | nucleus | 74.05 | 36.44 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 74.59 | 36.41 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 74.59 | 36.41 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 74.59 | 36.22 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 74.05 | 35.77 |
| KRG94685 | Soybean | nucleus | 80.54 | 34.98 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 18.38 | 34.0 |
| KRH06841 | Soybean | nucleus | 81.62 | 33.56 |
| CDY48974 | Canola | nucleus | 86.49 | 33.4 |
| Zm00001d042263_P001 | Maize | nucleus | 75.14 | 33.25 |
| KRH08406 | Soybean | nucleus | 75.68 | 31.53 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 83.78 | 28.81 |
| GSMUA_Achr10P... | Banana | nucleus | 77.84 | 28.29 |
| Solyc03g118310.2.1 | Tomato | nucleus | 74.05 | 25.95 |
| CDX97027 | Canola | nucleus | 39.46 | 24.5 |
| PGSC0003DMT400036951 | Potato | nucleus | 72.43 | 24.32 |
| CDX69821 | Canola | nucleus | 39.46 | 24.09 |
| CDY08769 | Canola | nucleus | 43.78 | 22.56 |
| CDY69978 | Canola | nucleus | 43.24 | 22.35 |
| CDY37835 | Canola | nucleus | 43.24 | 22.35 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 24.32 | 22.28 |
| CDY38270 | Canola | nucleus | 28.11 | 21.14 |
| CDY47924 | Canola | nucleus | 27.03 | 20.33 |
| CDY42237 | Canola | nucleus | 26.49 | 20.25 |
| CDY52738 | Canola | cytosol | 17.3 | 19.39 |
| CDX88610 | Canola | nucleus | 25.41 | 19.11 |
| CDY11882 | Canola | nucleus | 25.41 | 19.11 |
| CDY30182 | Canola | nucleus | 24.86 | 18.85 |
| CDY43542 | Canola | nucleus | 26.49 | 18.63 |
| CDX68608 | Canola | nucleus | 25.95 | 18.25 |
| CDY46719 | Canola | nucleus | 25.95 | 18.18 |
| CDY30505 | Canola | nucleus | 26.49 | 15.61 |
| CDX77160 | Canola | nucleus | 26.49 | 15.51 |
| CDY31199 | Canola | nucleus | 25.41 | 15.02 |
| CDX71377 | Canola | nucleus | 25.41 | 14.87 |
| CDY04543 | Canola | nucleus | 25.41 | 14.87 |
| CDX83286 | Canola | nucleus | 24.86 | 14.7 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 12.43 | 14.56 |
| CDY31399 | Canola | nucleus | 36.76 | 11.99 |
| CDX89760 | Canola | nucleus | 36.76 | 11.97 |
| CDX71316 | Canola | nucleus | 36.76 | 11.97 |
| CDY02227 | Canola | nucleus | 36.22 | 11.8 |
| CDY54227 | Canola | nucleus | 21.08 | 10.26 |
| CDY34878 | Canola | cytosol | 21.08 | 10.16 |
| CDX93399 | Canola | nucleus | 21.62 | 9.76 |
| CDY37964 | Canola | nucleus | 20.54 | 9.36 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | GO:A0A078EFC9 | EnsemblPlants:CDX98033 | ProteinID:CDX98033 |
| ProteinID:CDX98033.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00105401001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF13 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE8D9A | InterPro:bHLH_dom | SEG:seg |
Description
BnaA06g07840D
Coordinates
chrLK031902:-:638062..639030
Molecular Weight (calculated)
20671.2 Da
IEP (calculated)
8.630
GRAVY (calculated)
-0.309
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHTEL ESTPSSSSGL TPSPQTLPYR VKEELCPSSS SLPSPKGEQA
101: RIEVKLREGK AVNIHMFCGR RPGLLLSTMR ALDDLGLDVQ QAVISCFNGF ALDVFRAEQC QEGHEVFPEQ IKAVLLDTAG YSGLL
101: RIEVKLREGK AVNIHMFCGR RPGLLLSTMR ALDDLGLDVQ QAVISCFNGF ALDVFRAEQC QEGHEVFPEQ IKAVLLDTAG YSGLL
001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
Arabidopsis Description
SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.