Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019914.1-P | Field mustard | cytosol | 96.59 | 94.96 |
| CDY37964 | Canola | nucleus | 92.44 | 93.35 |
| CDY34878 | Canola | cytosol | 74.88 | 79.95 |
| CDY54227 | Canola | nucleus | 72.68 | 78.42 |
| AT1G10610.1 | Thale cress | nucleus | 70.49 | 65.53 |
| Solyc05g005300.2.1 | Tomato | nucleus | 33.66 | 28.63 |
| KRH45665 | Soybean | nucleus | 32.2 | 26.61 |
| CDY02227 | Canola | nucleus | 31.95 | 23.06 |
| CDX89760 | Canola | nucleus | 31.46 | 22.71 |
| VIT_01s0127g00650.t01 | Wine grape | nucleus | 9.51 | 22.16 |
| CDX71316 | Canola | nucleus | 30.49 | 22.01 |
| CDY38270 | Canola | nucleus | 13.17 | 21.95 |
| CDY31399 | Canola | nucleus | 30.24 | 21.87 |
| CDX98033 | Canola | nucleus | 9.76 | 21.62 |
| CDY19416 | Canola | nucleus | 9.76 | 21.62 |
| CDX88610 | Canola | nucleus | 12.68 | 21.14 |
| CDY42237 | Canola | nucleus | 12.2 | 20.66 |
| CDY47924 | Canola | nucleus | 12.2 | 20.33 |
| CDY11882 | Canola | nucleus | 12.2 | 20.33 |
| CDY30182 | Canola | nucleus | 11.95 | 20.08 |
| CDX68608 | Canola | nucleus | 12.2 | 19.01 |
| CDY43542 | Canola | nucleus | 12.2 | 19.01 |
| CDX83286 | Canola | nucleus | 14.39 | 18.85 |
| CDY46719 | Canola | nucleus | 11.95 | 18.56 |
| CDY31199 | Canola | nucleus | 14.15 | 18.53 |
| CDX97027 | Canola | nucleus | 12.93 | 17.79 |
| CDX69821 | Canola | nucleus | 12.93 | 17.49 |
| CDX71377 | Canola | nucleus | 13.41 | 17.41 |
| CDY04543 | Canola | nucleus | 13.17 | 17.09 |
| CDY30505 | Canola | nucleus | 12.68 | 16.56 |
| CDX77160 | Canola | nucleus | 12.68 | 16.46 |
| CDY52738 | Canola | cytosol | 6.59 | 16.36 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 7.8 | 15.84 |
| CDY37835 | Canola | nucleus | 13.41 | 15.36 |
| CDY69978 | Canola | nucleus | 13.41 | 15.36 |
| CDY08769 | Canola | nucleus | 13.41 | 15.32 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 3.41 | 14.0 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 5.12 | 13.29 |
| CDY21073 | Canola | nucleus | 13.17 | 12.53 |
| CDY28529 | Canola | nucleus | 13.41 | 12.53 |
| CDY34601 | Canola | nucleus | 13.17 | 12.16 |
| CDY48974 | Canola | nucleus | 12.93 | 11.06 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078DY88 | EnsemblPlants:CDX93399 | ProteinID:CDX93399 | ProteinID:CDX93399.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00156058001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 |
| PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF14 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE3010 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA06g06490D
Coordinates
chrLK031876:-:45838..47916
Molecular Weight (calculated)
47244.8 Da
IEP (calculated)
5.878
GRAVY (calculated)
-0.462
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMRGGERV KEFLRPFVDS REWDFCVIWK LGDDPSRRFI EWVGCCCSGS YIDKNIKHEH VEEEETQKMS SICRDEDNKH HIRTLACEAL SRFPLFMPLY
101: PGIHGEVVMS KSPKWLVNSG PGSKQDIFST RVLVPVRDGL VELFSFIMKP VDESLVDLII SHCNTTFEPF PEQTLPFRII SKEEESMLMH KEEDVVMQNT
201: MDDKKVAKEN FKSKNLHSER KRRERINQRI YALRAVVPNV TKVLPENSFQ MNKNGTLSDA VDYINQLLVE KQKLEDELRG INEIKSRRIA AEEESAIANP
301: HTEKVASRLN KIVNNEVSLE VYETGEGGFL IRVAQEHKQD GFKRLVEAVD SCGLEIIDVN FTRLDLRVMT VLNVNANKDG TTPENLRDLL LKMMTITSEN
401: PYAESLRQCT
101: PGIHGEVVMS KSPKWLVNSG PGSKQDIFST RVLVPVRDGL VELFSFIMKP VDESLVDLII SHCNTTFEPF PEQTLPFRII SKEEESMLMH KEEDVVMQNT
201: MDDKKVAKEN FKSKNLHSER KRRERINQRI YALRAVVPNV TKVLPENSFQ MNKNGTLSDA VDYINQLLVE KQKLEDELRG INEIKSRRIA AEEESAIANP
301: HTEKVASRLN KIVNNEVSLE VYETGEGGFL IRVAQEHKQD GFKRLVEAVD SCGLEIIDVN FTRLDLRVMT VLNVNANKDG TTPENLRDLL LKMMTITSEN
401: PYAESLRQCT
001: MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS EEGGTGRKKK ASFCRDDHNK HRIRTLACEA LSRFPLFMPL
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I
Arabidopsis Description
BHLH90Transcription factor bHLH90 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.