Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30182 | Canola | nucleus | 71.52 | 46.31 |
| CDY43542 | Canola | nucleus | 73.42 | 44.11 |
| CDX68608 | Canola | nucleus | 72.78 | 43.73 |
| CDY46719 | Canola | nucleus | 72.78 | 43.56 |
| AT4G29930.3 | Thale cress | nucleus | 68.35 | 41.06 |
| CDY52738 | Canola | cytosol | 38.61 | 36.97 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 25.32 | 26.14 |
| CDY38270 | Canola | nucleus | 39.24 | 25.2 |
| CDY11882 | Canola | nucleus | 37.97 | 24.39 |
| CDX88610 | Canola | nucleus | 37.97 | 24.39 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 37.34 | 24.18 |
| CDY47924 | Canola | nucleus | 36.08 | 23.17 |
| CDY42237 | Canola | nucleus | 34.81 | 22.73 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 29.11 | 21.9 |
| Solyc07g018010.2.1 | Tomato | nucleus | 33.54 | 20.95 |
| PGSC0003DMT400010463 | Potato | nucleus | 32.91 | 20.63 |
| PGSC0003DMT400044959 | Potato | nucleus | 29.11 | 19.91 |
| Solyc05g014590.2.1 | Tomato | nucleus | 26.58 | 18.18 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 29.75 | 18.08 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 26.58 | 15.11 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 26.58 | 15.11 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 26.58 | 15.11 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 9.49 | 15.0 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 27.22 | 14.1 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 25.32 | 13.56 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 22.78 | 13.14 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 22.15 | 13.06 |
| Os04t0300600-00 | Rice | cytosol | 24.05 | 12.88 |
| Zm00001d025141_P003 | Maize | nucleus | 20.89 | 12.6 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 20.89 | 12.45 |
| CDY19416 | Canola | nucleus | 14.56 | 12.43 |
| CDX98033 | Canola | nucleus | 14.56 | 12.43 |
| TraesCSU01G138400.2 | Wheat | nucleus | 19.62 | 12.35 |
| Zm00001d004095_P001 | Maize | nucleus | 23.42 | 12.05 |
| Zm00001d024522_P001 | Maize | nucleus | 19.62 | 12.02 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 22.15 | 11.99 |
| EES14602 | Sorghum | nucleus | 21.52 | 11.81 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 17.09 | 11.44 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 22.78 | 11.39 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 18.35 | 11.33 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 18.35 | 11.33 |
| Os04t0301500-01 | Rice | nucleus | 22.15 | 11.29 |
| TraesCSU01G138900.1 | Wheat | nucleus | 18.35 | 11.28 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 18.99 | 11.07 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 17.72 | 10.89 |
| EES05013 | Sorghum | nucleus | 18.99 | 10.64 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 20.89 | 10.19 |
| CDY30505 | Canola | nucleus | 19.62 | 9.87 |
| CDX77160 | Canola | nucleus | 19.62 | 9.81 |
| CDX83286 | Canola | nucleus | 18.99 | 9.58 |
| CDY31199 | Canola | nucleus | 18.99 | 9.58 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 15.19 | 9.56 |
| CDY04543 | Canola | nucleus | 18.35 | 9.18 |
| CDX71377 | Canola | nucleus | 17.72 | 8.86 |
| CDX69821 | Canola | nucleus | 16.46 | 8.58 |
| CDX97027 | Canola | nucleus | 15.82 | 8.39 |
| CDY37835 | Canola | nucleus | 18.99 | 8.38 |
| CDY69978 | Canola | nucleus | 18.99 | 8.38 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 19.62 | 8.33 |
| CDY08769 | Canola | nucleus | 18.35 | 8.08 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 13.29 | 7.66 |
| CDY37964 | Canola | nucleus | 14.56 | 5.67 |
| CDY34878 | Canola | cytosol | 13.29 | 5.47 |
| CDY21073 | Canola | nucleus | 14.56 | 5.34 |
| CDY54227 | Canola | nucleus | 12.66 | 5.26 |
| CDY34601 | Canola | nucleus | 14.56 | 5.18 |
| CDX93399 | Canola | nucleus | 13.29 | 5.12 |
| CDY28529 | Canola | nucleus | 13.92 | 5.01 |
| CDY48974 | Canola | nucleus | 13.92 | 4.59 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 5.7 | 4.46 |
| CDX89760 | Canola | nucleus | 15.82 | 4.4 |
| CDY31399 | Canola | nucleus | 15.19 | 4.23 |
| CDX71316 | Canola | nucleus | 15.19 | 4.23 |
| CDY02227 | Canola | nucleus | 15.19 | 4.23 |
Protein Annotations
| EnsemblPlants:CDY03557 | EnsemblPlantsGene:GSBRNA2T00116281001 | ncoils:Coil | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | ProteinID:CDY03557 |
| ProteinID:CDY03557.1 | SEG:seg | UniParc:UPI0004EE7EED | MapMan:35.1 | : | : |
Description
BnaC03g68160D
Coordinates
chrLK031944:-:281108..281677
Molecular Weight (calculated)
18200.9 Da
IEP (calculated)
5.795
GRAVY (calculated)
-0.191
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MQELIDQEKR LAAEIRELES QSSLIENPAR DYNCINNFPE NQQRDLSDVN VLRSKKSRQM DYNTFGSSIT RVHVHSLIEV LEMKVTWMGE KTVVVCITCS
101: KKRETLLQLC KVLESLDLNI ITTNFSLFSS RLSTTLFLQV SPPSLFSMFN EITTFSIN
101: KKRETLLQLC KVLESLDLNI ITTNFSLFSS RLSTTLFLQV SPPSLFSMFN EITTFSIN
001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQADEEE SSAVEAKIQM AIAAYNDPNC LINF
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQADEEE SSAVEAKIQM AIAAYNDPNC LINF
Arabidopsis Description
BHLH27Transcription factor bHLH27 [Source:UniProtKB/Swiss-Prot;Acc:Q700E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.