Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G028200.3 | Wheat | nucleus | 68.01 | 93.36 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 65.59 | 92.08 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 61.29 | 70.37 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 46.51 | 64.55 |
| KRH37338 | Soybean | nucleus | 27.69 | 42.21 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 26.34 | 40.16 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 22.58 | 40.0 |
| KRH12334 | Soybean | nucleus | 26.08 | 39.92 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 29.3 | 39.21 |
| KRH19109 | Soybean | nucleus | 23.66 | 38.1 |
| PGSC0003DMT400010463 | Potato | nucleus | 25.0 | 36.9 |
| Solyc07g018010.2.1 | Tomato | nucleus | 25.0 | 36.76 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 25.27 | 36.15 |
| PGSC0003DMT400044959 | Potato | nucleus | 22.04 | 35.5 |
| Zm00001d004095_P001 | Maize | nucleus | 28.23 | 34.2 |
| CDY42237 | Canola | nucleus | 21.77 | 33.47 |
| CDY47924 | Canola | nucleus | 22.04 | 33.33 |
| Bra020462.1-P | Field mustard | nucleus | 22.04 | 33.33 |
| Bra006831.1-P | Field mustard | nucleus | 22.04 | 33.33 |
| CDX88610 | Canola | nucleus | 22.04 | 33.33 |
| Bra002756.1-P | Field mustard | nucleus | 22.04 | 33.33 |
| CDY38270 | Canola | nucleus | 22.04 | 33.33 |
| AT5G57150.4 | Thale cress | nucleus | 23.66 | 33.33 |
| Os04t0300600-00 | Rice | cytosol | 26.08 | 32.88 |
| CDY11882 | Canola | nucleus | 21.51 | 32.52 |
| Solyc05g014590.2.1 | Tomato | nucleus | 20.16 | 32.47 |
| CDY30182 | Canola | nucleus | 21.24 | 32.38 |
| Bra024115.1-P | Field mustard | nucleus | 21.24 | 32.38 |
| KRH02772 | Soybean | nucleus | 29.3 | 32.06 |
| CDY46719 | Canola | nucleus | 21.77 | 30.68 |
| CDY43542 | Canola | nucleus | 21.24 | 30.04 |
| AT4G29930.3 | Thale cress | nucleus | 20.97 | 29.66 |
| CDX68608 | Canola | nucleus | 20.97 | 29.66 |
| Bra011152.1-P | Field mustard | nucleus | 19.62 | 29.44 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 24.19 | 28.48 |
| CDY52738 | Canola | cytosol | 11.56 | 26.06 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 19.35 | 24.41 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 8.33 | 19.62 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 16.94 | 18.58 |
| TraesCS7D01G529200.1 | Wheat | nucleus | 14.25 | 15.68 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 12.9 | 13.79 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 12.9 | 13.71 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 13.71 | 13.39 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 12.63 | 13.31 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 10.48 | 13.18 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 12.37 | 13.03 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 5.11 | 13.01 |
| TraesCS4D01G051600.2 | Wheat | nucleus | 15.86 | 11.8 |
| TraesCS7D01G308300.1 | Wheat | nucleus | 15.05 | 10.65 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 15.59 | 10.47 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 15.59 | 10.41 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G017700.1 | EnsemblPlantsGene:TraesCS3D01G017700 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:6016871..6020801
Molecular Weight (calculated)
41213.9 Da
IEP (calculated)
7.014
GRAVY (calculated)
-0.416
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHVNYCEAP KLMDPNIRRY LRDNSSAQIQ IPSRILWGSN PKMEKQPITV QQTRWLGRQG ARWHQDRVLS LATSAMAHNK TLEGDRRRGS RAMEADMDAS
101: LDFLELEAHL VFDLGNADSK RWMSLADCCS SYLPAEDSLS GLDSSGYNDS TSSPDGATSS RSTASTRATR ASKNIVEERV RRRRLNEKLY AIRGVVPNIT
201: KMDKASIIQD AVAYIEELQE QERRILAEVS DLEAGGCTAV VKSAASTGSE GVEDAGVGFS PRKKMRRTAS SSSSINDVVT SPATHPVLLE LEVIPIAEKL
301: AVVSMRHDNA QHVMAKIYKA LDSLRLKVIN SSVTVVDGRT VHTMFIETEE TDSVETIKEM VQATLSHLEF SM
101: LDFLELEAHL VFDLGNADSK RWMSLADCCS SYLPAEDSLS GLDSSGYNDS TSSPDGATSS RSTASTRATR ASKNIVEERV RRRRLNEKLY AIRGVVPNIT
201: KMDKASIIQD AVAYIEELQE QERRILAEVS DLEAGGCTAV VKSAASTGSE GVEDAGVGFS PRKKMRRTAS SSSSINDVVT SPATHPVLLE LEVIPIAEKL
301: AVVSMRHDNA QHVMAKIYKA LDSLRLKVIN SSVTVVDGRT VHTMFIETEE TDSVETIKEM VQATLSHLEF SM
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.