Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002756.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY52738 | Canola | cytosol | 66.26 | 98.79 |
| CDY47924 | Canola | nucleus | 93.9 | 93.9 |
| CDY42237 | Canola | nucleus | 91.06 | 92.56 |
| CDX88610 | Canola | nucleus | 89.84 | 89.84 |
| CDY11882 | Canola | nucleus | 87.4 | 87.4 |
| AT5G57150.4 | Thale cress | nucleus | 82.52 | 76.89 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 63.41 | 63.93 |
| KRH37338 | Soybean | nucleus | 59.76 | 60.25 |
| KRH12334 | Soybean | nucleus | 58.94 | 59.67 |
| CDY30182 | Canola | nucleus | 55.69 | 56.15 |
| CDY46719 | Canola | nucleus | 59.76 | 55.68 |
| CDY43542 | Canola | nucleus | 57.32 | 53.61 |
| CDX68608 | Canola | nucleus | 56.5 | 52.85 |
| PGSC0003DMT400010463 | Potato | nucleus | 54.06 | 52.78 |
| Solyc07g018010.2.1 | Tomato | nucleus | 54.06 | 52.57 |
| KRH19109 | Soybean | nucleus | 49.19 | 52.38 |
| PGSC0003DMT400044959 | Potato | nucleus | 46.75 | 49.78 |
| Solyc05g014590.2.1 | Tomato | nucleus | 44.31 | 47.19 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 49.59 | 46.92 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 37.8 | 44.29 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 45.94 | 40.65 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 45.53 | 40.29 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 45.12 | 39.93 |
| KRH02772 | Soybean | nucleus | 54.47 | 39.41 |
| Zm00001d025141_P003 | Maize | nucleus | 41.87 | 39.31 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 25.2 | 39.24 |
| Zm00001d024522_P001 | Maize | nucleus | 41.06 | 39.15 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 45.94 | 37.05 |
| EES14602 | Sorghum | nucleus | 42.28 | 36.11 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 39.02 | 35.82 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 39.02 | 35.04 |
| Os04t0301500-01 | Rice | nucleus | 42.68 | 33.87 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 30.89 | 32.2 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 19.92 | 32.03 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 32.93 | 31.64 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 37.8 | 31.53 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 33.74 | 31.32 |
| TraesCSU01G138400.2 | Wheat | nucleus | 31.71 | 31.08 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 32.11 | 30.86 |
| EES05013 | Sorghum | nucleus | 35.37 | 30.85 |
| TraesCSU01G138900.1 | Wheat | nucleus | 32.11 | 30.74 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 32.11 | 30.74 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 30.89 | 30.28 |
| Os04t0300600-00 | Rice | cytosol | 35.37 | 29.49 |
| Zm00001d004095_P001 | Maize | nucleus | 36.59 | 29.32 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 31.3 | 28.41 |
| CDY19416 | Canola | nucleus | 21.14 | 28.11 |
| CDX98033 | Canola | nucleus | 21.14 | 28.11 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 32.52 | 27.4 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 29.27 | 26.28 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 33.74 | 26.27 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 33.33 | 25.31 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 33.33 | 22.04 |
| CDX83286 | Canola | nucleus | 25.61 | 20.13 |
| CDY30505 | Canola | nucleus | 25.61 | 20.06 |
| CDX77160 | Canola | nucleus | 25.61 | 19.94 |
| CDY31199 | Canola | nucleus | 24.8 | 19.49 |
| CDX71377 | Canola | nucleus | 24.8 | 19.3 |
| CDY04543 | Canola | nucleus | 24.39 | 18.99 |
| CDY37835 | Canola | nucleus | 23.58 | 16.2 |
| CDY69978 | Canola | nucleus | 23.17 | 15.92 |
| CDX97027 | Canola | nucleus | 19.11 | 15.77 |
| CDY08769 | Canola | nucleus | 22.76 | 15.6 |
| CDX69821 | Canola | nucleus | 19.11 | 15.51 |
| CDY34878 | Canola | cytosol | 21.95 | 14.06 |
| CDY54227 | Canola | nucleus | 21.54 | 13.95 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 11.38 | 13.86 |
| CDY37964 | Canola | nucleus | 22.36 | 13.55 |
| CDX93399 | Canola | nucleus | 21.95 | 13.17 |
| CDY34601 | Canola | nucleus | 23.17 | 12.84 |
| CDY21073 | Canola | nucleus | 22.36 | 12.76 |
| CDY28529 | Canola | nucleus | 22.36 | 12.53 |
| CDY48974 | Canola | nucleus | 22.76 | 11.69 |
| CDX89760 | Canola | nucleus | 26.02 | 11.27 |
| CDY02227 | Canola | nucleus | 25.61 | 11.09 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 4.47 | 11.0 |
| CDY31399 | Canola | nucleus | 25.2 | 10.93 |
| CDX71316 | Canola | nucleus | 24.8 | 10.74 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HIG8 | UniProt:A0A078HIG8 | EnsemblPlants:CDY38270 | ProteinID:CDY38270 |
| ProteinID:CDY38270.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00065627001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002544DC7 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g11180DBnaA10g11180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIG8]
Coordinates
chrLK032420:+:144720..147637
Molecular Weight (calculated)
27892.8 Da
IEP (calculated)
4.359
GRAVY (calculated)
-0.443
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNVDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY
101: EESKLEAEIR ELESTPKSSL SFSKDFDRDL LVPVTSKKMK QLDSGPSRSL IEVLELKVTF MGERTVVVNV TCNKRTDTMV KLCEVFESLN LKIITSNLNS
201: FSGMIFNTVF VEAEEEEQEV VRLKIETGIG AYNETQSPTL SIDSLY
101: EESKLEAEIR ELESTPKSSL SFSKDFDRDL LVPVTSKKMK QLDSGPSRSL IEVLELKVTF MGERTVVVNV TCNKRTDTMV KLCEVFESLN LKIITSNLNS
201: FSGMIFNTVF VEAEEEEQEV VRLKIETGIG AYNETQSPTL SIDSLY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.