Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98033 | Canola | nucleus | 36.67 | 87.03 |
| CDY19416 | Canola | nucleus | 36.45 | 86.49 |
| CDY48974 | Canola | nucleus | 90.89 | 83.3 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 38.27 | 77.06 |
| CDY21073 | Canola | nucleus | 57.4 | 58.47 |
| CDY34601 | Canola | nucleus | 58.54 | 57.88 |
| KRG94685 | Soybean | nucleus | 51.94 | 53.52 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 62.41 | 50.93 |
| KRH06841 | Soybean | nucleus | 50.8 | 49.56 |
| KRH08406 | Soybean | nucleus | 47.61 | 47.07 |
| EES04142 | Sorghum | nucleus | 39.64 | 46.28 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 39.86 | 46.17 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 39.86 | 45.93 |
| GSMUA_Achr10P... | Banana | nucleus | 53.08 | 45.78 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 39.41 | 45.65 |
| Os01t0928000-01 | Rice | nucleus | 39.41 | 45.41 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 39.41 | 45.17 |
| Zm00001d042263_P001 | Maize | nucleus | 39.86 | 41.87 |
| Solyc03g118310.2.1 | Tomato | nucleus | 49.43 | 41.1 |
| PGSC0003DMT400036951 | Potato | nucleus | 49.66 | 39.56 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 7.97 | 35.0 |
| CDX97027 | Canola | nucleus | 20.05 | 29.53 |
| CDX69821 | Canola | nucleus | 19.82 | 28.71 |
| CDY08769 | Canola | nucleus | 23.01 | 28.13 |
| CDY69978 | Canola | nucleus | 22.78 | 27.93 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 12.76 | 27.72 |
| CDY37835 | Canola | nucleus | 22.55 | 27.65 |
| CDY38270 | Canola | nucleus | 12.53 | 22.36 |
| CDY30182 | Canola | nucleus | 12.07 | 21.72 |
| CDY47924 | Canola | nucleus | 12.07 | 21.54 |
| CDY42237 | Canola | nucleus | 11.85 | 21.49 |
| CDY11882 | Canola | nucleus | 11.62 | 20.73 |
| CDY46719 | Canola | nucleus | 12.3 | 20.45 |
| CDY43542 | Canola | nucleus | 12.07 | 20.15 |
| CDX88610 | Canola | nucleus | 11.16 | 19.92 |
| CDX68608 | Canola | nucleus | 11.85 | 19.77 |
| CDY52738 | Canola | cytosol | 7.06 | 18.79 |
| CDY30505 | Canola | nucleus | 13.21 | 18.47 |
| CDY04543 | Canola | nucleus | 13.21 | 18.35 |
| CDX77160 | Canola | nucleus | 13.21 | 18.35 |
| CDX71377 | Canola | nucleus | 12.98 | 18.04 |
| CDY31199 | Canola | nucleus | 12.07 | 16.93 |
| CDX83286 | Canola | nucleus | 11.85 | 16.61 |
| CDY31399 | Canola | nucleus | 20.5 | 15.87 |
| CDY02227 | Canola | nucleus | 20.27 | 15.67 |
| CDX71316 | Canola | nucleus | 20.27 | 15.67 |
| CDX89760 | Canola | nucleus | 19.82 | 15.32 |
| CDY54227 | Canola | nucleus | 12.53 | 14.47 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 5.01 | 13.92 |
| CDY34878 | Canola | cytosol | 11.85 | 13.54 |
| CDX93399 | Canola | nucleus | 12.53 | 13.41 |
| CDY37964 | Canola | nucleus | 12.3 | 13.3 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | GO:A0A078GTQ8 | UniProt:A0A078GTQ8 | EnsemblPlants:CDY28529 |
| ProteinID:CDY28529 | ProteinID:CDY28529.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00040443001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF13 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE85C7 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC02g36310DBnaC02g36310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTQ8]
Coordinates
chrLK032221:+:444015..446023
Molecular Weight (calculated)
47368.2 Da
IEP (calculated)
6.141
GRAVY (calculated)
-0.411
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLDGNGGAV WLGGGGGGGG ERVHEEENGA AHFKPMLEGV DWFSNQPQEL HMLQSHHQDF RFLGGGFAFH QSVDSSSSFS PSQAFGLDMS HQPSFLAAAN
101: NNNPFDNNNA FEFGSDSGFL GHIQAPMGFG SLMQLGNNNS TPLCGGGGFT PLELEGFGSP ASFVGSRAKV LKPLEVLASS GAQPTLFQKR AAMRQSSGMM
201: RKLSDDGEMD ETGVEVSGLN YESDELNESG KAAESVQNGG GGRGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR
301: INDLHNELES TPNGSLPPTS SSFHPLTPTP QTLSCRVKEE LCPSSLPSPK GQQARVEVRL REGRAVNIHM FCGRRPGLLL DTMKALDNLG LDVQQAVISC
401: FNGFALDVFR AEQCQEGQEI LPDQIKAVLF DTAGYAGMI
101: NNNPFDNNNA FEFGSDSGFL GHIQAPMGFG SLMQLGNNNS TPLCGGGGFT PLELEGFGSP ASFVGSRAKV LKPLEVLASS GAQPTLFQKR AAMRQSSGMM
201: RKLSDDGEMD ETGVEVSGLN YESDELNESG KAAESVQNGG GGRGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR
301: INDLHNELES TPNGSLPPTS SSFHPLTPTP QTLSCRVKEE LCPSSLPSPK GQQARVEVRL REGRAVNIHM FCGRRPGLLL DTMKALDNLG LDVQQAVISC
401: FNGFALDVFR AEQCQEGQEI LPDQIKAVLF DTAGYAGMI
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.