Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04142 | Sorghum | nucleus | 83.25 | 92.55 |
| CDX98033 | Canola | nucleus | 33.25 | 75.14 |
| CDY19416 | Canola | nucleus | 33.01 | 74.59 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 38.76 | 74.31 |
| Os01t0928000-01 | Rice | nucleus | 65.79 | 72.18 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 64.83 | 70.76 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 64.35 | 70.6 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 63.88 | 70.45 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 63.16 | 69.66 |
| Bra034246.1-P | Field mustard | nucleus | 40.91 | 40.91 |
| KRG94685 | Soybean | nucleus | 41.15 | 40.38 |
| Bra032947.1-P | Field mustard | nucleus | 42.34 | 40.05 |
| CDY28529 | Canola | nucleus | 41.87 | 39.86 |
| CDY21073 | Canola | nucleus | 40.67 | 39.44 |
| Bra019794.1-P | Field mustard | nucleus | 39.95 | 39.29 |
| Bra016749.1-P | Field mustard | nucleus | 40.67 | 39.26 |
| AT1G12860.1 | Thale cress | nucleus | 41.87 | 38.89 |
| CDY34601 | Canola | nucleus | 40.91 | 38.51 |
| KRH06841 | Soybean | nucleus | 40.67 | 37.78 |
| CDY48974 | Canola | nucleus | 42.82 | 37.37 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 47.13 | 36.62 |
| AT3G26744.1 | Thale cress | nucleus | 43.06 | 36.44 |
| Bra025226.1-P | Field mustard | nucleus | 42.82 | 36.02 |
| KRH08406 | Soybean | nucleus | 38.04 | 35.81 |
| GSMUA_Achr10P... | Banana | nucleus | 43.06 | 35.36 |
| Zm00001d049294_P001 | Maize | nucleus | 41.39 | 33.4 |
| Solyc03g118310.2.1 | Tomato | nucleus | 42.11 | 33.33 |
| Zm00001d007382_P001 | Maize | nucleus | 39.47 | 31.79 |
| PGSC0003DMT400036951 | Potato | nucleus | 39.95 | 30.31 |
| Zm00001d036382_P001 | Maize | nucleus | 21.77 | 28.8 |
| Zm00001d014814_P002 | Maize | plastid | 21.77 | 24.8 |
| Zm00001d027546_P001 | Maize | nucleus | 21.29 | 24.18 |
| Zm00001d025141_P003 | Maize | nucleus | 13.88 | 22.14 |
| Zm00001d024522_P001 | Maize | nucleus | 12.2 | 19.77 |
| Zm00001d004095_P001 | Maize | nucleus | 13.88 | 18.89 |
| Zm00001d004007_P001 | Maize | nucleus | 12.92 | 15.08 |
| Zm00001d025205_P001 | Maize | nucleus | 13.16 | 14.44 |
| Zm00001d053895_P001 | Maize | nucleus | 17.46 | 11.68 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | UniProt:A0A1D6N2E7 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | ProteinID:ONM34888.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000844CFEA | EnsemblPlantsGene:Zm00001d042263 | EnsemblPlants:Zm00001d042263_P001 | EnsemblPlants:Zm00001d042263_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 175Inducer of CBF expression 2
Coordinates
chr3:+:157976446..157978862
Molecular Weight (calculated)
43608.3 Da
IEP (calculated)
4.616
GRAVY (calculated)
-0.163
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSAEVKLV DEITGEGGAA GDWGYLGSDG MGSGSYPAFP FSRDVLSTPT SASLLLSMDP AALFDFNGTF PPSSAAAATA GSSLSAFHDF SCINPFDDAG
101: HFLGAPPPVP AAAAPQQQGQ KGGFFAPLPA SDFNDAGMSW DDEDEIDQSV DASSMAISAS MENAAGAVAG ASGAGGGSGR GKKKGMPAKN LMAERRRRKK
201: LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRISD LHNELESAPS SSLVGPTSAS FNPSTPTLQT FPGQVKEELC PGSFPSPTGQ QATVEVRMRE
301: GHAVNIHMFC ARRPGILLST MTALDSLGLD IEQAVISCFN GFAMDVFRAE VCGHHANTIS SENSDGFNST KLPNPPLLTP ASSCLSVASP QQCADGPGMV
401: PEEIKAVLMH TAGLHNAM
101: HFLGAPPPVP AAAAPQQQGQ KGGFFAPLPA SDFNDAGMSW DDEDEIDQSV DASSMAISAS MENAAGAVAG ASGAGGGSGR GKKKGMPAKN LMAERRRRKK
201: LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRISD LHNELESAPS SSLVGPTSAS FNPSTPTLQT FPGQVKEELC PGSFPSPTGQ QATVEVRMRE
301: GHAVNIHMFC ARRPGILLST MTALDSLGLD IEQAVISCFN GFAMDVFRAE VCGHHANTIS SENSDGFNST KLPNPPLLTP ASSCLSVASP QQCADGPGMV
401: PEEIKAVLMH TAGLHNAM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.