Factsheet for Bra034246.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08070_001	Banana	nucleus	39.47	75.69
Bra032947.1-P	Field mustard	nucleus	71.53	67.65
Bra025226.1-P	Field mustard	nucleus	74.4	62.58
Bra019794.1-P	Field mustard	nucleus	57.42	56.47
Bra016749.1-P	Field mustard	nucleus	58.37	56.35
KRG94685	Soybean	nucleus	50.24	49.3
VIT_14s0068g01200.t01	Wine grape	nucleus	63.4	49.26
EES04142	Sorghum	nucleus	41.63	46.28
KRH06841	Soybean	nucleus	49.76	46.22
TraesCS3B01G476000.1	Wheat	nucleus	41.63	45.91
TraesCS3D01G434900.1	Wheat	nucleus	41.63	45.67
TraesCS3A01G442200.1	Wheat	nucleus	41.39	45.17
HORVU3Hr1G096460.5	Barley	nucleus	40.91	45.12
KRH08406	Soybean	nucleus	47.37	44.59
GSMUA_Achr10P...	Banana	nucleus	53.35	43.81
Os01t0928000-01	Rice	nucleus	39.47	43.31
Zm00001d042263_P001	Maize	nucleus	40.91	40.91
Solyc03g118310.2.1	Tomato	nucleus	49.76	39.39
PGSC0003DMT400036951	Potato	nucleus	50.72	38.48
Bra009022.1-P	Field mustard	nucleus	21.05	29.04
Bra031852.1-P	Field mustard	nucleus	24.64	28.77
Bra024404.1-P	Field mustard	nucleus	24.64	28.69
Bra002756.1-P	Field mustard	nucleus	12.68	21.54
Bra020462.1-P	Field mustard	nucleus	12.2	20.73
Bra024115.1-P	Field mustard	nucleus	11.72	20.08
Bra006831.1-P	Field mustard	nucleus	11.48	19.51
Bra034392.1-P	Field mustard	nucleus	13.88	18.35
Bra011152.1-P	Field mustard	nucleus	10.77	18.15
Bra011972.1-P	Field mustard	nucleus	13.64	18.04
Bra000495.1-P	Field mustard	nucleus	12.44	16.88
Bra002004.1-P	Field mustard	nucleus	21.77	16.05
Bra013041.1-P	Field mustard	nucleus	21.77	16.02
Bra031723.1-P	Field mustard	cytosol	11.24	12.18
Bra019914.1-P	Field mustard	cytosol	11.96	11.99

Protein Annotations

EnsemblPlants:Bra034246.1	EnsemblPlants:Bra034246.1-P	EnsemblPlantsGene:Bra034246	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002543817	UniProt:M4EZK3	MapMan:15.5.32	MapMan:26.4.3.4.1	:

Description

AT3G26744 (E=3e-116) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor

Coordinates

chrA01:+:26757374..26758934

Molecular Weight (calculated)

45695.1 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.473

Length

418 amino acids

Sequence
(BLAST)

001: MALDGNGGAV WLNSSGEEEA SWGGNQEHVG ASSLSHFKAP MLEGDWFSNP QDLHVLQNQQ DFRFLGGFPF NPNDNLLLDS SSSQPFTLDT SQQPSFLPSN
101: NKSCLLSAPS DTNPFDNAFE FGSDSCFLGP LTQGFTPLEL QGFTSPAKVL KPLEVLASSS SGGQPTLFQK RAAMRQSSGS KFGNSERKLS DETGLHYESD
201: EMNQSGRAAE SVENIRGSKG KKKGLPAKNL MAERRRRKKL NDRLYMLRSI VPKISKMDRA SILGDAIDYL KELLQRINDL HNELDQSTPT PPGSLPQTPS
301: SFHPLTPTPQ SLSCHVKEEL CPSSLPSPKG QQARVEVRVR EGRAVKIHMF CGRRPGLLLA TMKALDNLGL DVQQAVISCF NGFALDVFRA EQCQEGQEIL
401: PDQIKAVLLD TAGYAGLI

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.