Factsheet for Bra025226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032947.1-P	Field mustard	nucleus	81.29	91.4
AT3G26744.1	Thale cress	nucleus	90.14	90.69
CDY48974	Canola	nucleus	80.68	83.72
GSMUA_Achr6P08070_001	Banana	nucleus	33.8	77.06
Bra034246.1-P	Field mustard	nucleus	62.58	74.4
Bra016749.1-P	Field mustard	nucleus	58.35	66.97
Bra019794.1-P	Field mustard	nucleus	56.54	66.12
VIT_14s0068g01200.t01	Wine grape	nucleus	60.97	56.32
KRG94685	Soybean	nucleus	45.67	53.29
KRH06841	Soybean	nucleus	45.27	50.0
KRH08406	Soybean	nucleus	44.47	49.77
TraesCS3B01G476000.1	Wheat	nucleus	37.02	48.55
GSMUA_Achr10P...	Banana	nucleus	49.7	48.53
TraesCS3D01G434900.1	Wheat	nucleus	37.02	48.29
TraesCS3A01G442200.1	Wheat	nucleus	36.62	47.52
HORVU3Hr1G096460.5	Barley	nucleus	36.22	47.49
EES04142	Sorghum	nucleus	35.61	47.07
Os01t0928000-01	Rice	nucleus	35.41	46.19
Solyc03g118310.2.1	Tomato	nucleus	47.28	44.51
PGSC0003DMT400036951	Potato	nucleus	47.48	42.83
Zm00001d042263_P001	Maize	nucleus	36.02	42.82
Bra009022.1-P	Field mustard	nucleus	18.51	30.36
Bra024404.1-P	Field mustard	nucleus	20.93	28.97
Bra031852.1-P	Field mustard	nucleus	20.72	28.77
Bra002756.1-P	Field mustard	nucleus	11.47	23.17
Bra020462.1-P	Field mustard	nucleus	11.07	22.36
Bra024115.1-P	Field mustard	nucleus	10.87	22.13
Bra006831.1-P	Field mustard	nucleus	10.26	20.73
Bra011152.1-P	Field mustard	nucleus	10.26	20.56
Bra034392.1-P	Field mustard	nucleus	11.67	18.35
Bra011972.1-P	Field mustard	nucleus	11.67	18.35
Bra000495.1-P	Field mustard	nucleus	10.66	17.21
Bra002004.1-P	Field mustard	nucleus	19.32	16.93
Bra013041.1-P	Field mustard	nucleus	19.11	16.73
Bra031723.1-P	Field mustard	cytosol	11.67	15.03
Bra019914.1-P	Field mustard	cytosol	12.47	14.87

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra025226	EnsemblPlants:Bra025226.1	EnsemblPlants:Bra025226.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4E8X0	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945
PANTHER:PTHR31945:SF13	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253F685	InterPro:bHLH_dom	SEG:seg

Description

AT3G26744 (E=2e-192) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor

Coordinates

chrA06:+:22682843..22684594

Molecular Weight (calculated)

53037.5 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.438

Length

497 amino acids

Sequence
(BLAST)

001: MVLDGNGGGV WLGGGGGGGG GERVQEEENE EASWGRNQED GGQFKPMLEG GGDWFTSNQP HPQDLQMLQS QQDFRFLGGF GFNPNDNLLL LQHSMDSSSS
101: CSPSQAFSLD PSQASFLAAA NNKSCLLNVV PSSANPFDNA FEFGSDSGFL NQIQAPVSMG FGSLTQLGSS VPDFLSARSL PPPENNNATP LCGGGGGGFT
201: PLELEGFGSP ASFVGSRPKV LKPLEVLASS GAQPTLFQKR AAMRQSSGSK MGNSESSGMR RLSDDGDMDE TGVEVSGLNY ESDELNESGK ASESVQNGGG
301: KGKKKGMPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIN DLHNELESTP TGSLPPTSSS FHPLTPTPQT LSCRVKEELC
401: PSSLPSPKGQ QARVEVRLRE GRAVNIHMFC GGRPGLLLAT MKALDNLGLD VQQAVISCFN GFALDVFRAE QCQEGQEILP DQIKAVLFDT AGYAGMI

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.