Factsheet for Bra002004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31399	Canola	nucleus	99.12	99.12
CDX71316	Canola	nucleus	96.65	96.48
Bra013041.1-P	Field mustard	nucleus	89.42	89.26
AT2G16910.1	Thale cress	nucleus	89.24	88.62
VIT_01s0127g00860.t01	Wine grape	nucleus	49.21	45.59
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.4	43.34
KRH36073	Soybean	nucleus	42.5	42.21
VIT_03s0038g02540.t01	Wine grape	nucleus	48.15	42.06
KRG90676	Soybean	extracellular, vacuole	41.45	40.73
GSMUA_Achr3P00640_001	Banana	nucleus	21.34	40.6
Solyc08g062780.1.1	Tomato	nucleus	42.68	40.6
PGSC0003DMT400021165	Potato	nucleus	29.81	38.85
Os02t0120500-01	Rice	nucleus	32.1	32.97
TraesCS6B01G095700.1	Wheat	nucleus	31.75	32.55
TraesCS6A01G071300.1	Wheat	nucleus	31.57	32.55
HORVU6Hr1G012760.1	Barley	nucleus	31.92	32.44
HORVU6Hr1G012730.1	Barley	nucleus	31.92	32.44
TraesCS6D01G069400.1	Wheat	nucleus	31.57	32.31
TraesCS6B01G095600.1	Wheat	nucleus	31.39	32.19
Bra031723.1-P	Field mustard	cytosol	21.87	32.12
TraesCS6D01G069300.1	Wheat	nucleus	31.22	31.78
TraesCS6A01G071200.1	Wheat	nucleus	30.69	31.41
GSMUA_Achr1P07330_001	Banana	nucleus	23.1	31.04
KXG29315	Sorghum	nucleus	30.51	30.3
Bra019914.1-P	Field mustard	cytosol	22.22	30.22
Zm00001d053895_P001	Maize	nucleus	29.81	27.04
Bra002756.1-P	Field mustard	nucleus	10.93	25.2
Bra020462.1-P	Field mustard	nucleus	10.76	24.8
Bra011152.1-P	Field mustard	nucleus	10.76	24.6
Bra024115.1-P	Field mustard	nucleus	10.23	23.77
Bra006831.1-P	Field mustard	nucleus	10.23	23.58
Bra009022.1-P	Field mustard	nucleus	12.52	23.43
Bra031852.1-P	Field mustard	nucleus	14.64	23.18
Bra024404.1-P	Field mustard	nucleus	14.64	23.12
Bra011972.1-P	Field mustard	nucleus	12.52	22.47
Bra034392.1-P	Field mustard	nucleus	12.35	22.15
Bra000495.1-P	Field mustard	nucleus	11.99	22.08
Bra034246.1-P	Field mustard	nucleus	16.05	21.77
Bra032947.1-P	Field mustard	nucleus	16.23	20.81
Bra016749.1-P	Field mustard	nucleus	15.7	20.55
Bra019794.1-P	Field mustard	nucleus	15.17	20.24
Bra025226.1-P	Field mustard	nucleus	16.93	19.32

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra002004	EnsemblPlants:Bra002004.1	EnsemblPlants:Bra002004.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4CCS3	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025442D2	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT2G16910 (E=2e-274) AMS | AMS (ABORTED MICROSPORES); DNA binding / transcription factor

Coordinates

chrA10:-:12305461..12307743

Molecular Weight (calculated)

64287.3 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.722

Length

567 amino acids

Sequence
(BLAST)

001: MESSMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTQLIE ENGTEEFSFE GCRDVMFHHP RTKSCEILAH LPSSIPLDSG IYAETLLTNQ
101: TGWLSESSEP GFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG NCNMLMDETV TINMMVADEV ESKPYGMLSG DIHQKGSKDE EMMNLTSPYD
201: ISTDQMRLNF LPPMSEYEAQ QHLKVKSDYN HQDLGYLPEN GSKEMMGMNP FSTEDGMSVM GEPSLLVNEQ QIANDKEMNE SGTGSDCSDQ IDDEDDPKYK
301: KKTGKHSQAK NLLAERRRRK KLNDRLYALR SLVPRITKLD RASILGDAIN YVKELQNEAK ELQDELEENS ETEDGANRQQ GGVSLNGTVV TGFHPGLSCN
401: SSVPNLKQDV DLENANDKGQ EMEPQVDVAQ LDGREFFVKV ICEYKPGGFT RLMEALDSLG LEVTNANTTR FLSLVSNVFK VEKTDSEMVP AEHVRNSLLE
501: ITRNTSRGWH DDQMATGSIQ NEKNEVDYQH YDDNHHHSGH HHLNDHQMNH SAQHHHHHQH INHYQNQ

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.