Factsheet for TraesCS6A01G071200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G069300.1	Wheat	nucleus	95.85	95.33
TraesCS6B01G095600.1	Wheat	nucleus	94.95	95.12
TraesCS6A01G071300.1	Wheat	nucleus	93.32	94.0
HORVU6Hr1G012730.1	Barley	nucleus	91.7	91.04
HORVU6Hr1G012760.1	Barley	nucleus	91.7	91.04
Os02t0120500-01	Rice	nucleus	59.57	59.78
KXG29315	Sorghum	nucleus	60.65	58.84
Zm00001d053895_P001	Maize	nucleus	61.01	54.08
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	21.66	40.96
GSMUA_Achr3P00640_001	Banana	nucleus	20.22	37.58
GSMUA_Achr1P07330_001	Banana	nucleus	24.37	31.99
CDY31399	Canola	nucleus	31.59	30.86
Bra002004.1-P	Field mustard	nucleus	31.41	30.69
KRH36073	Soybean	nucleus	31.59	30.65
AT2G16910.1	Thale cress	nucleus	31.59	30.65
CDY02227	Canola	nucleus	31.41	30.63
Bra013041.1-P	Field mustard	nucleus	31.41	30.63
VIT_01s0127g00860.t01	Wine grape	nucleus	33.57	30.39
CDX71316	Canola	nucleus	31.05	30.28
CDX89760	Canola	nucleus	30.87	30.11
Solyc08g062780.1.1	Tomato	nucleus	31.95	29.7
KRG90676	Soybean	extracellular, vacuole	30.87	29.64
VIT_03s0038g02540.t01	Wine grape	nucleus	33.94	28.97
PGSC0003DMT400021165	Potato	nucleus	22.74	28.97
TraesCS2A01G271700.1	Wheat	nucleus	12.09	24.1
TraesCS5A01G533200.1	Wheat	nucleus	11.01	23.83
TraesCS5A01G533900.1	Wheat	nucleus	9.93	23.31
TraesCS7A01G543300.1	Wheat	nucleus	13.0	21.88
TraesCS3A01G028200.3	Wheat	nucleus	10.29	21.03
TraesCS5A01G503500.1	Wheat	nucleus	13.0	20.45
TraesCS3A01G057900.1	Wheat	nucleus	11.91	20.18
TraesCS5A01G503300.1	Wheat	nucleus	12.82	20.11
TraesCS3A01G442200.1	Wheat	nucleus	13.72	19.84
TraesCS3A01G442600.1	Wheat	nucleus	9.75	18.49
TraesCS5A01G503400.1	Wheat	nucleus	11.73	18.01
TraesCS3A01G058000.1	Wheat	nucleus	9.75	18.0
TraesCS2A01G281200.1	Wheat	nucleus	10.83	17.75
TraesCS7A01G311800.1	Wheat	nucleus	16.25	17.27
TraesCS4A01G263300.2	Wheat	nucleus	14.98	17.01

Protein Annotations

EnsemblPlants:TraesCS6A01G071200.1	EnsemblPlantsGene:TraesCS6A01G071200	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr6A:-:39047074..39049342

Molecular Weight (calculated)

59107.7 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.518

Length

554 amino acids

Sequence
(BLAST)

001: MGGGDYHQQS LIGGAAVHGH GGGTVEAALR PLVGGSHGWD YCMYWRLSPD QRFLEMAGFC CSAEFEAQVA TLADVPCSIP LDSSSIGMHA QALLSNQPIW
101: QSSGGAPGPD LLTGYEAASS GGEKTRLLVP VAGGIVELFA SRYMVEEQQM AELVMAQCGG GGQGWQETEA QGFAWDAAAA ADSGRLYAAA SLNLFDGAGG
201: SGSGEPFLAG VQDDGAAGVG WQYAAESSEP PSTVAQEHQQ LHGSGVGRAD SGSEGSDMQL GDPDDDGNGE TQRGSGKDGK DAEGKRQQCK NLEAERKRRR
301: KLNDRLYKLR SLVPNITKMD RASILGDAID YIVGLQKQVK DLQDELEDPN PPGVTGGDSK APDVLLDDHP PPGLDNDEDS PQQQPFPSAG GKRPRKEEAG
401: DEEEKEAEDQ DMEPQVEVRQ VEGKEFFLQV LCSHKSGRFV RIMDEIAALG LQITSVNVTS YNKLVLNVFR AVMKDNEAAV PADRVRDSLL EVTREMYGGA
501: GAWSSPVPPP PLTNAKLDGM DGQAVPTVAG EHYQLHHQVL GGYHHQHLQY LAMD

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.