Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G308300.1 | Wheat | nucleus | 97.89 | 96.96 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 97.31 | 96.39 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 92.32 | 90.07 |
| Zm00001d049294_P001 | Maize | nucleus | 70.44 | 70.85 |
| Os11t0523700-01 | Rice | nucleus | 71.21 | 70.8 |
| EES08566 | Sorghum | nucleus | 69.87 | 70.0 |
| TraesCS4A01G263300.2 | Wheat | nucleus | 58.54 | 62.5 |
| Zm00001d007382_P001 | Maize | nucleus | 56.43 | 56.65 |
| KRH54112 | Soybean | nucleus | 44.72 | 50.43 |
| KRH63854 | Soybean | nucleus | 44.34 | 49.68 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 35.12 | 47.78 |
| PGSC0003DMT400074075 | Potato | nucleus | 46.45 | 45.66 |
| Solyc06g068870.2.1 | Tomato | nucleus | 46.07 | 45.2 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 43.19 | 43.6 |
| TraesCS7A01G543300.1 | Wheat | nucleus | 16.89 | 26.75 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 16.89 | 24.93 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 15.55 | 24.77 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 16.7 | 24.72 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 15.55 | 22.44 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 12.86 | 22.33 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 11.52 | 21.58 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 10.36 | 21.09 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 9.98 | 19.19 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 8.64 | 19.07 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 17.47 | 16.55 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 17.27 | 16.25 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 9.02 | 16.1 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 10.36 | 15.98 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G311800.1 | EnsemblPlantsGene:TraesCS7A01G311800 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF12 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | TIGR:cd04873 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : |
Description
No Description!
Coordinates
chr7A:-:442272238..442275156
Molecular Weight (calculated)
54117.0 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.327
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRFNNSLW MQEDDGHEQQ GLGHEQPPAM GQEAGHHHDQ HLLAMPTGGG GGFRAPSMLD EDWYFGAGAV GDGAANGSMA LVPAAMEASG SSSGFGAGPQ
101: MFPLLNLGGT GPFDVSGFDL GGSGTGGGDF TAFLGAGNAS NTSPVSLLPH RNTGFLGSFG GFGTAPAQMT EFGGLAGFDL FDTGAGGGGG GGSGSSSEGP
201: AAPVSLTAPF SGRGKAAVLR PLEIFPPVGA QPTLFQKRAL RRNAGEEDDD RKRKAAVAAE GSALSAGCDT MLDDADEDMG SIDASGLNYD SEDGRDVEES
301: GRKDGKESNA NSTVTGGAAA EGKGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLHK ISNLQNELES SPSMPSLPPT
401: PTSFHPVTPT LPALPSRVKE ELCPSALPSP TGQQPTVEVR LREGRAVNIH MLCPRRPGLV LSAMKAIEAL GLDVQQAVIS CFNGFALDVF KAEQCKDGPG
501: LQPEEIKAVL LQSAGFHLPA M
101: MFPLLNLGGT GPFDVSGFDL GGSGTGGGDF TAFLGAGNAS NTSPVSLLPH RNTGFLGSFG GFGTAPAQMT EFGGLAGFDL FDTGAGGGGG GGSGSSSEGP
201: AAPVSLTAPF SGRGKAAVLR PLEIFPPVGA QPTLFQKRAL RRNAGEEDDD RKRKAAVAAE GSALSAGCDT MLDDADEDMG SIDASGLNYD SEDGRDVEES
301: GRKDGKESNA NSTVTGGAAA EGKGKKKGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLHK ISNLQNELES SPSMPSLPPT
401: PTSFHPVTPT LPALPSRVKE ELCPSALPSP TGQQPTVEVR LREGRAVNIH MLCPRRPGLV LSAMKAIEAL GLDVQQAVIS CFNGFALDVF KAEQCKDGPG
501: LQPEEIKAVL LQSAGFHLPA M
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.