Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G308300.1 | Wheat | nucleus | 92.32 | 93.73 |
| TraesCS7B01G211600.1 | Wheat | nucleus | 91.76 | 93.16 |
| TraesCS7A01G311800.1 | Wheat | nucleus | 90.07 | 92.32 |
| Zm00001d049294_P001 | Maize | nucleus | 67.98 | 70.08 |
| EES08566 | Sorghum | nucleus | 67.42 | 69.23 |
| Os11t0523700-01 | Rice | nucleus | 67.6 | 68.89 |
| HORVU7Hr1G118860.1 | Barley | plastid | 7.87 | 60.0 |
| Zm00001d007382_P001 | Maize | nucleus | 53.75 | 55.3 |
| KRH54112 | Soybean | nucleus | 41.95 | 48.48 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 33.52 | 47.23 |
| KRH63854 | Soybean | nucleus | 41.01 | 47.1 |
| PGSC0003DMT400074075 | Potato | nucleus | 43.45 | 43.77 |
| Solyc06g068870.2.1 | Tomato | nucleus | 43.07 | 43.31 |
| VIT_01s0244g00130.t01 | Wine grape | nucleus | 41.2 | 42.64 |
| HORVU3Hr1G034540.16 | Barley | plastid | 15.17 | 27.27 |
| HORVU7Hr1G062400.4 | Barley | plastid | 8.99 | 27.12 |
| HORVU7Hr1G118740.3 | Barley | nucleus | 16.29 | 26.36 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 15.54 | 23.38 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 10.11 | 21.01 |
| HORVU4Hr1G032690.2 | Barley | nucleus, plastid | 11.98 | 20.71 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 10.86 | 19.02 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 8.8 | 18.73 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 9.18 | 17.88 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 17.6 | 16.85 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 17.6 | 16.85 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 9.55 | 16.67 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 8.99 | 14.81 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 3.56 | 12.42 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G074490.3 | EnsemblPlantsGene:HORVU7Hr1G074490 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF12 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B486687 | UniProt:A0A287WWN2 | MapMan:15.5.32 | MapMan:26.4.3.4.1 | : |
Description
No Description!
Coordinates
chrchr7H:+:426247969..426251314
Molecular Weight (calculated)
54718.0 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.229
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: SALLCPSALP SLRFCRMPAP LPEGDGHEQQ GLGHELPAAM GMMPMMGQEA GNHHDPHLLS MPTGGGGGFR APSMLDEDWY FGAGAVGDAA ANGSMALVPA
101: AMEASGSSSG FGAGPQMFPL LNLGCTGPFD VSGFDLGSSG AGGGDFTAFL GAGNASNTSP VSLLPHGSTG FLGSFAGFGT APAQMTEFGG LAGFDLFDTG
201: AGGGGGSSSS SEGPAAPVSL TAPFSGRGKA AVLRPLEIFP PVGAQPTXXX KRALRRNAGE EDDDKKRKAA AAAEGSALSA GCDTILDDAD EDIGSIDASG
301: LNYDSEDGRG VEESGRKDGK ESNANSTVTG GAAAEGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLHKISDLQN
401: ELESSPSMPS LPPTPTSFHP LTPTLPALPS RVKEELCPSA LPSPTGQQPT VEVRLREGQA VNIHMLCPRR PGLVLSAMKA IESLGLDVQQ AVISCFNGFA
501: LDVFKAEQCK DGPGLQPEEI KAVLLQSAGF HPTM
101: AMEASGSSSG FGAGPQMFPL LNLGCTGPFD VSGFDLGSSG AGGGDFTAFL GAGNASNTSP VSLLPHGSTG FLGSFAGFGT APAQMTEFGG LAGFDLFDTG
201: AGGGGGSSSS SEGPAAPVSL TAPFSGRGKA AVLRPLEIFP PVGAQPTXXX KRALRRNAGE EDDDKKRKAA AAAEGSALSA GCDTILDDAD EDIGSIDASG
301: LNYDSEDGRG VEESGRKDGK ESNANSTVTG GAAAEGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLHKISDLQN
401: ELESSPSMPS LPPTPTSFHP LTPTLPALPS RVKEELCPSA LPSPTGQQPT VEVRLREGQA VNIHMLCPRR PGLVLSAMKA IESLGLDVQQ AVISCFNGFA
501: LDVFKAEQCK DGPGLQPEEI KAVLLQSAGF HPTM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.