Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G066090.2 | Barley | cytosol | 50.16 | 100.0 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 87.87 | 96.4 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 86.89 | 95.32 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 86.89 | 95.32 |
| Os04t0301500-01 | Rice | nucleus | 66.56 | 65.48 |
| Zm00001d025141_P003 | Maize | nucleus | 55.08 | 64.12 |
| Zm00001d024522_P001 | Maize | nucleus | 53.77 | 63.57 |
| EES14602 | Sorghum | nucleus | 59.67 | 63.19 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 42.3 | 52.87 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 44.26 | 51.92 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 35.41 | 51.43 |
| KRH37338 | Soybean | nucleus | 40.66 | 50.82 |
| KRH12334 | Soybean | nucleus | 39.67 | 49.79 |
| KRH19109 | Soybean | nucleus | 35.74 | 47.19 |
| PGSC0003DMT400010463 | Potato | nucleus | 38.69 | 46.83 |
| Solyc07g018010.2.1 | Tomato | nucleus | 38.69 | 46.64 |
| CDY38270 | Canola | nucleus | 37.05 | 45.94 |
| CDX88610 | Canola | nucleus | 37.05 | 45.94 |
| Bra006831.1-P | Field mustard | nucleus | 37.05 | 45.94 |
| Bra002756.1-P | Field mustard | nucleus | 37.05 | 45.94 |
| CDY11882 | Canola | nucleus | 36.39 | 45.12 |
| CDY47924 | Canola | nucleus | 35.74 | 44.31 |
| Bra020462.1-P | Field mustard | nucleus | 35.41 | 43.9 |
| CDY42237 | Canola | nucleus | 34.75 | 43.8 |
| PGSC0003DMT400044959 | Potato | nucleus | 32.79 | 43.29 |
| AT5G57150.4 | Thale cress | nucleus | 35.74 | 41.29 |
| Solyc05g014590.2.1 | Tomato | nucleus | 31.15 | 41.13 |
| CDY52738 | Canola | cytosol | 21.31 | 39.39 |
| HORVU7Hr1G118860.1 | Barley | plastid | 8.85 | 38.57 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 31.48 | 38.25 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 32.13 | 38.13 |
| Bra024115.1-P | Field mustard | nucleus | 30.49 | 38.11 |
| CDY30182 | Canola | nucleus | 30.49 | 38.11 |
| Bra011152.1-P | Field mustard | nucleus | 29.84 | 36.69 |
| KRH02772 | Soybean | nucleus | 40.66 | 36.47 |
| CDY46719 | Canola | nucleus | 31.48 | 36.36 |
| CDY43542 | Canola | nucleus | 30.49 | 35.36 |
| AT4G29930.3 | Thale cress | nucleus | 29.84 | 34.6 |
| CDX68608 | Canola | nucleus | 29.84 | 34.6 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 30.16 | 33.58 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 30.16 | 31.19 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 31.15 | 29.32 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 14.1 | 27.22 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 18.03 | 17.97 |
| HORVU7Hr1G062400.4 | Barley | plastid | 10.16 | 17.51 |
| HORVU3Hr1G034540.16 | Barley | plastid | 14.43 | 14.81 |
| HORVU7Hr1G118740.3 | Barley | nucleus | 15.74 | 14.55 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 17.7 | 14.25 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 15.41 | 13.24 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 22.3 | 12.19 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 22.3 | 12.19 |
| HORVU4Hr1G032690.2 | Barley | nucleus, plastid | 11.15 | 11.0 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 19.02 | 10.86 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A287I976 | InterPro:ACT_dom | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU2Hr1G066100 | EnsemblPlants:HORVU2Hr1G066100.1 |
| InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PFscan:PS51671 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF70 | SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI000B473798 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:457198851..457421215
Molecular Weight (calculated)
33646.8 Da
IEP (calculated)
4.739
GRAVY (calculated)
-0.409
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: EHLEKERQSN RTEKSINSRR IRGEKKQDMD PDMGENFAYY WETQRYLESE ELVDSIFVGA TEDAISYYDS SSPDGSHSSS TLTGAAMPGA GIGMGGTGAN
101: KNILMERDRR RKLNEKLYTL RSVVPNITKM DKASIIKDAI EYIQHLQAEE RQMEAEVSAL ESATGADDDC DGGLSVEQVS SAQRKKVKRA LSVSSMNDAL
201: LAAAAVASPP VEVLELRVSE VSEKVLVVSV TCSKQRDAMT KVCRVLEELR LRVITANITS VSGCLMHTLF VEVDEMDRFQ MKETVEAALS QLDSIGSPPL
301: SSMSY
101: KNILMERDRR RKLNEKLYTL RSVVPNITKM DKASIIKDAI EYIQHLQAEE RQMEAEVSAL ESATGADDDC DGGLSVEQVS SAQRKKVKRA LSVSSMNDAL
201: LAAAAVASPP VEVLELRVSE VSEKVLVVSV TCSKQRDAMT KVCRVLEELR LRVITANITS VSGCLMHTLF VEVDEMDRFQ MKETVEAALS QLDSIGSPPL
301: SSMSY
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.