Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G298600.1 | Wheat | nucleus | 85.29 | 76.09 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 83.66 | 75.52 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 83.33 | 75.44 |
| KXG26070 | Sorghum | nucleus | 58.5 | 48.91 |
| Zm00001d004007_P001 | Maize | nucleus | 54.9 | 46.93 |
| Os04t0381700-00 | Rice | nucleus | 53.92 | 46.88 |
| Zm00001d025205_P001 | Maize | nucleus | 57.84 | 46.46 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 37.58 | 37.83 |
| HORVU7Hr1G118860.1 | Barley | plastid | 7.19 | 31.43 |
| KRH22827 | Soybean | nucleus | 31.37 | 29.72 |
| Bra000495.1-P | Field mustard | nucleus | 29.74 | 29.55 |
| KRH26533 | Soybean | nucleus | 31.05 | 29.5 |
| CDY31199 | Canola | nucleus | 29.74 | 29.07 |
| Solyc06g051550.2.1 | Tomato | cytosol | 28.76 | 28.95 |
| PGSC0003DMT400048941 | Potato | nucleus | 29.41 | 28.85 |
| CDX83286 | Canola | nucleus | 29.41 | 28.75 |
| CDY04543 | Canola | nucleus | 29.41 | 28.48 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 29.09 | 28.34 |
| AT2G28160.1 | Thale cress | nucleus | 29.41 | 28.3 |
| KRH30560 | Soybean | nucleus | 28.76 | 28.21 |
| Bra011972.1-P | Field mustard | nucleus | 28.76 | 27.85 |
| CDX71377 | Canola | nucleus | 28.76 | 27.85 |
| KRH25108 | Soybean | nucleus | 25.49 | 27.37 |
| CDY30505 | Canola | nucleus | 27.45 | 26.75 |
| Bra034392.1-P | Field mustard | nucleus | 27.45 | 26.58 |
| CDX77160 | Canola | nucleus | 27.45 | 26.58 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 17.32 | 20.62 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 17.97 | 18.03 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 14.38 | 17.53 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 14.71 | 16.42 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 16.99 | 16.05 |
| HORVU7Hr1G062400.4 | Barley | plastid | 8.5 | 14.69 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 7.19 | 14.38 |
| HORVU3Hr1G034540.16 | Barley | plastid | 12.42 | 12.79 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 13.73 | 11.83 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 14.05 | 11.35 |
| HORVU7Hr1G118740.3 | Barley | nucleus | 12.09 | 11.21 |
| HORVU4Hr1G032690.2 | Barley | nucleus, plastid | 10.78 | 10.68 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 16.67 | 9.55 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 17.32 | 9.5 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 17.32 | 9.5 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G068960.2 | EnsemblPlantsGene:HORVU2Hr1G068960 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B47D5B0 | UniProt:A0A287IBL3 | MapMan:15.5.32 | MapMan:25.4.1.5 | : |
Description
No Description!
Coordinates
chrchr2H:-:485964339..485966588
Molecular Weight (calculated)
32506.3 Da
IEP (calculated)
7.927
GRAVY (calculated)
-0.496
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAPGWRTSC ISATSCSAVE VEVEVASPGT RTTWWALLLL TRHGGRNXXX XXXECEGASP DDNPCSYDDV ISPVSGEQGP GCEPSRDDSD LSGTRKRRDR
101: SKTIVSERKR RFRMKEKLYE LRALVPNITK MDKASIIADA VAYVKNLQSH ARKLKEDVAT LEARPGLAGR RQQQQQQQKQ GRRQGQHGRN GGDDEGNSGS
201: SRGGGGARVT LVSAAQVGEG RFFVTVECER RDGVAAPLCA AVESLAGFLV ESSNLGCSSD RVVSTLTLKV SEATEEVMIS DRTVKLWVMA ALLSEGFRPE
301: ATSEIC
101: SKTIVSERKR RFRMKEKLYE LRALVPNITK MDKASIIADA VAYVKNLQSH ARKLKEDVAT LEARPGLAGR RQQQQQQQKQ GRRQGQHGRN GGDDEGNSGS
201: SRGGGGARVT LVSAAQVGEG RFFVTVECER RDGVAAPLCA AVESLAGFLV ESSNLGCSSD RVVSTLTLKV SEATEEVMIS DRTVKLWVMA ALLSEGFRPE
301: ATSEIC
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.