Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0952800-01 | |
| Os04t0381700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G28160.1 | Os04t0381700-00 | AT2G28160.1 | 18268542 |
| AT2G28160.1 | Os01t0952800-01 | AT3G56970.1 | 18268542 |
| AT2G28160.1 | Os01t0952800-01 | AT3G56980.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G281200.1 | Wheat | nucleus | 55.4 | 57.69 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 55.68 | 57.14 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 54.83 | 56.93 |
| KXG26070 | Sorghum | nucleus | 58.52 | 56.28 |
| Zm00001d004007_P001 | Maize | nucleus | 56.53 | 55.59 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 46.88 | 53.92 |
| Zm00001d025205_P001 | Maize | nucleus | 55.68 | 51.44 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 39.2 | 45.39 |
| Solyc06g051550.2.1 | Tomato | cytosol | 27.56 | 31.91 |
| Bra000495.1-P | Field mustard | nucleus | 27.56 | 31.49 |
| CDY31199 | Canola | nucleus | 27.84 | 31.31 |
| PGSC0003DMT400048941 | Potato | nucleus | 27.56 | 31.09 |
| KRH22827 | Soybean | nucleus | 28.41 | 30.96 |
| KRH26533 | Soybean | nucleus | 28.12 | 30.75 |
| CDX83286 | Canola | nucleus | 27.27 | 30.67 |
| KRH30560 | Soybean | nucleus | 26.99 | 30.45 |
| AT2G28160.1 | Thale cress | nucleus | 27.27 | 30.19 |
| CDY04543 | Canola | nucleus | 26.99 | 30.06 |
| CDX71377 | Canola | nucleus | 26.99 | 30.06 |
| Bra011972.1-P | Field mustard | nucleus | 26.99 | 30.06 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 26.7 | 29.94 |
| KRH25108 | Soybean | nucleus | 23.86 | 29.47 |
| Bra034392.1-P | Field mustard | nucleus | 25.57 | 28.48 |
| CDX77160 | Canola | nucleus | 25.57 | 28.48 |
| CDY30505 | Canola | nucleus | 25.28 | 28.34 |
| Os04t0301500-01 | Rice | nucleus | 17.61 | 20.0 |
| Os04t0300600-00 | Rice | cytosol | 15.91 | 18.98 |
| Os03t0135700-01 | Rice | nucleus | 15.06 | 14.97 |
| Os01t0928000-01 | Rice | nucleus | 14.77 | 13.65 |
| Os02t0120500-01 | Rice | nucleus | 19.89 | 12.68 |
| Os11t0523700-01 | Rice | nucleus | 17.9 | 12.02 |
| Os10t0544200-01 | Rice | nucleus | 12.78 | 11.84 |
Protein Annotations
| EntrezGene:107276663 | MapMan:15.5.32 | MapMan:25.4.1.5 | Gene3D:4.10.280.10 | UniProt:A0A0N7KIY3 | ProteinID:BAS88897.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| EnsemblPlantsGene:Os04g0381700 | EnsemblPlants:Os04t0381700-00 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001C7E36E | RefSeq:XP_015634338.1 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix protein 156Similar to OSIGBa0092E09.4 protein. (Os04t0381700-00)
Coordinates
chr4:+:18720467..18722735
Molecular Weight (calculated)
36816.4 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.299
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG DDDDNGGVDG GVGGGDDRMQ EWQNNCEGAG SPDHQPSCGD
101: GDGDGDGDVS PRDGELGDGD GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKMDKASIIA DAVVYVKDLQ AHARKLKEEV AALEEARPIR
201: PPPPSAAAQR PQRQPRRVAA AAAQLARAAD AAAVTTAAAA PHGARVAHVG AAQVGEGRFF VTVECEPAAA AARGGGGGVA APVCAAVESL SCFTVESSTV
301: GCSPDRVVAT LTLKVSEAEE DVSAISECTV KLWVMAALLK EGFRPQPTVQ IS
101: GDGDGDGDVS PRDGELGDGD GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKMDKASIIA DAVVYVKDLQ AHARKLKEEV AALEEARPIR
201: PPPPSAAAQR PQRQPRRVAA AAAQLARAAD AAAVTTAAAA PHGARVAHVG AAQVGEGRFF VTVECEPAAA AARGGGGGVA APVCAAVESL SCFTVESSTV
301: GCSPDRVVAT LTLKVSEAEE DVSAISECTV KLWVMAALLK EGFRPQPTVQ IS
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.