Factsheet for Bra011972.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra003260.1-P
Bra003261.1-P
Bra007289.1-P
Bra007290.1-P
Bra011972.1-P
Bra014653.1-P
Bra014654.1-P
Bra014657.1-P
Bra014658.1-P
Bra014659.1-P
Bra014970.1-P
Bra014971.1-P
Bra034392.1-P
Bra041013.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28160.1	Bra000495.1-P	AT2G28160.1	18268542
AT2G28160.1	Bra011972.1-P	AT2G28160.1	18268542
AT2G28160.1	Bra034392.1-P	AT2G28160.1	18268542
AT2G28160.1	Bra014659.1-P	AT3G56970.1	18268542
AT2G28160.1	Bra003260.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra003261.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra007289.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra007290.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra014653.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra014654.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra014657.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra014658.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra014970.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra014971.1-P	AT3G56980.1	18268542
AT2G28160.1	Bra041013.1-P	AT3G56980.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04543	Canola	nucleus	97.15	97.15
CDX71377	Canola	nucleus	96.2	96.2
AT2G28160.1	Thale cress	nucleus	88.61	88.05
Bra034392.1-P	Field mustard	nucleus	83.86	83.86
Bra000495.1-P	Field mustard	nucleus	80.7	82.79
KRH22827	Soybean	nucleus	53.48	52.32
VIT_06s0061g00720.t01	Wine grape	nucleus	50.0	50.32
KRH25108	Soybean	nucleus	44.62	49.47
KRH26533	Soybean	nucleus	50.0	49.07
KRH30560	Soybean	nucleus	47.15	47.76
Solyc06g051550.2.1	Tomato	cytosol	44.3	46.05
PGSC0003DMT400048941	Potato	nucleus	44.94	45.51
GSMUA_Achr6P27600_001	Banana	nucleus	30.06	31.25
HORVU2Hr1G068960.2	Barley	nucleus	27.85	28.76
TraesCS2A01G281200.1	Wheat	nucleus	30.7	28.7
TraesCS2D01G280100.1	Wheat	nucleus	30.38	28.32
TraesCS2B01G298600.1	Wheat	nucleus	30.7	28.28
KXG26070	Sorghum	nucleus	31.33	27.05
Os04t0381700-00	Rice	nucleus	30.06	26.99
Zm00001d004007_P001	Maize	nucleus	30.06	26.54
Zm00001d025205_P001	Maize	nucleus	30.38	25.2
Bra011152.1-P	Field mustard	nucleus	19.3	24.6
Bra024115.1-P	Field mustard	nucleus	18.99	24.59
Bra002756.1-P	Field mustard	nucleus	18.99	24.39
Bra020462.1-P	Field mustard	nucleus	18.67	23.98
Bra006831.1-P	Field mustard	nucleus	18.35	23.58
Bra009022.1-P	Field mustard	nucleus	17.09	17.82
Bra031852.1-P	Field mustard	nucleus	18.35	16.2
Bra024404.1-P	Field mustard	nucleus	17.41	15.32
Bra031723.1-P	Field mustard	cytosol	17.09	13.99
Bra019794.1-P	Field mustard	nucleus	18.35	13.65
Bra034246.1-P	Field mustard	nucleus	18.04	13.64
Bra016749.1-P	Field mustard	nucleus	18.35	13.39
Bra032947.1-P	Field mustard	nucleus	18.35	13.12
Bra019914.1-P	Field mustard	cytosol	16.77	12.71
Bra002004.1-P	Field mustard	nucleus	22.47	12.52
Bra013041.1-P	Field mustard	nucleus	21.52	11.97
Bra025226.1-P	Field mustard	nucleus	18.35	11.67

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.5	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra011972	EnsemblPlants:Bra011972.1	EnsemblPlants:Bra011972.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4D664	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945
PANTHER:PTHR31945:SF17	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025419A8	InterPro:bHLH_dom	SEG:seg

Description

AT2G28160 (E=1e-145) FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 | FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor

Coordinates

chrA07:+:10846082..10847903

Molecular Weight (calculated)

35256.4 Da

IEP (calculated)

4.677

GRAVY (calculated)

-0.499

Length

316 amino acids

Sequence
(BLAST)

001: MKGRVIALTN LNDLELHNFL VDPNFDQFIN LIRGDDQTIE HPPLDFDLGG PLHNSPCFID DNQFIPTPVD DLFDELPDID SNVAESFRSF EGESVVRASG
101: EDDYNDGDDS SATTTNNDGS RKKKTDRSRT LISERKRRGR MKDKLYALRS LVPNITKMDK ASIVGDAVAY VQELQSQAKK LKADIAGLEA SLTSTEGYQE
201: PAPVAQKSHT FRCINPPVSK KISQMDVIQV EEKEFYVRLV CNKGEGVAAS LYKSLESLTS FQVQNSNLSS PSPDTYLLTY TLDGTCFEQS LNLPNLKLRI
301: TGSLLNQGFE FIKPFN

Best Arabidopsis Sequence Match ( AT2G28160.1 )
(BLAST)

001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT

Arabidopsis Description

FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.