Factsheet for Bra020462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47924	Canola	nucleus	99.59	99.59
CDY42237	Canola	nucleus	95.94	97.52
Bra002756.1-P	Field mustard	nucleus	93.5	93.5
Bra006831.1-P	Field mustard	nucleus	89.43	89.43
AT5G57150.4	Thale cress	nucleus	82.52	76.89
VIT_11s0052g00100.t01	Wine grape	nucleus	60.16	60.66
KRH12334	Soybean	nucleus	58.13	58.85
KRH37338	Soybean	nucleus	58.13	58.61
Bra024115.1-P	Field mustard	nucleus	54.47	54.92
KRH19109	Soybean	nucleus	49.19	52.38
Bra011152.1-P	Field mustard	nucleus	52.03	51.61
PGSC0003DMT400010463	Potato	nucleus	52.85	51.59
Solyc07g018010.2.1	Tomato	nucleus	52.85	51.38
PGSC0003DMT400044959	Potato	nucleus	45.53	48.48
Solyc05g014590.2.1	Tomato	nucleus	44.31	47.19
GSMUA_Achr7P16000_001	Banana	nucleus	47.15	44.62
GSMUA_Achr6P30900_001	Banana	nucleus	36.99	43.33
KRH02772	Soybean	nucleus	54.88	39.71
TraesCS2D01G270300.1	Wheat	nucleus	43.9	38.85
TraesCS2A01G271700.1	Wheat	nucleus	43.5	38.49
TraesCS2B01G289900.1	Wheat	nucleus	43.09	38.13
Zm00001d024522_P001	Maize	nucleus	39.84	37.98
Zm00001d025141_P003	Maize	nucleus	39.02	36.64
HORVU2Hr1G066100.1	Barley	cytosol, nucleus	43.9	35.41
EES14602	Sorghum	nucleus	40.65	34.72
TraesCS2D01G270000.2	Wheat	nucleus	37.8	34.7
TraesCS2B01G289700.2	Wheat	nucleus	37.8	33.94
Os04t0301500-01	Rice	nucleus	41.06	32.58
GSMUA_Achr4P12700_001	Banana	nucleus	38.62	32.2
TraesCS5A01G533900.1	Wheat	nucleus	30.08	31.36
TraesCS3B01G018400.1	Wheat	nucleus	33.74	31.32
TraesCS5A01G533200.1	Wheat	nucleus	32.11	30.86
TraesCSU01G138900.1	Wheat	nucleus	32.11	30.74
TraesCSU01G138400.2	Wheat	nucleus	31.3	30.68
HORVU4Hr1G087590.1	Barley	nucleus	31.71	30.35
HORVU2Hr1G066090.2	Barley	cytosol	18.7	30.07
TraesCS4B01G364800.1	Wheat	nucleus	30.89	29.69
EES05013	Sorghum	nucleus	33.74	29.43
Zm00001d004095_P001	Maize	nucleus	36.59	29.32
HORVU4Hr1G087610.1	Barley	nucleus	29.67	29.08
Os04t0300600-00	Rice	cytosol	33.74	28.14
TraesCS3A01G028200.3	Wheat	nucleus	30.89	28.04
TraesCS3A01G442600.1	Wheat	nucleus	31.71	26.71
HORVU2Hr1G066000.7	Barley	nucleus	29.27	26.28
TraesCS3D01G435200.1	Wheat	nucleus	32.52	25.32
HORVU3Hr1G005500.3	Barley	cytosol, nucleus	33.33	25.31
TraesCS3D01G017700.1	Wheat	nucleus	33.33	22.04
Bra034392.1-P	Field mustard	nucleus	24.8	19.3
Bra000495.1-P	Field mustard	nucleus	23.98	19.16
Bra011972.1-P	Field mustard	nucleus	23.98	18.67
Bra031852.1-P	Field mustard	nucleus	23.58	16.2
Bra024404.1-P	Field mustard	nucleus	23.17	15.88
Bra009022.1-P	Field mustard	nucleus	18.7	15.18
Bra031723.1-P	Field mustard	cytosol	21.14	13.47
Bra019794.1-P	Field mustard	nucleus	22.36	12.94
Bra016749.1-P	Field mustard	nucleus	21.54	12.24
Bra019914.1-P	Field mustard	cytosol	20.73	12.23
Bra034246.1-P	Field mustard	nucleus	20.73	12.2
Bra032947.1-P	Field mustard	nucleus	21.54	11.99
Bra025226.1-P	Field mustard	nucleus	22.36	11.07
Bra002004.1-P	Field mustard	nucleus	24.8	10.76
Bra013041.1-P	Field mustard	nucleus	24.8	10.74

Protein Annotations

EnsemblPlants:Bra020462.1	EnsemblPlants:Bra020462.1-P	EnsemblPlantsGene:Bra020462	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF26	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002545F04	UniProt:M4DVB8	MapMan:15.5.32	:

Description

AT5G57150 (E=6e-111) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA02:-:6910649..6913068

Molecular Weight (calculated)

28051.0 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.448

Length

246 amino acids

Sequence
(BLAST)

001: MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY
101: EESKLEAEIR ELESTPKSCL SFSKDFDPDL LVPVTSKKMK QLDSGSSRSL IEVIELKVTS MGERIMVVNV TCNKRTDTMV KLCEVFESLN LKILTSNLNY
201: FSGMIFNTLF IEADEEEQEV VRLKIETGIG AYNETQSPTW SIDSLY

Best Arabidopsis Sequence Match ( AT5G57150.1 )
(BLAST)

001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.