Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47924 | Canola | nucleus | 97.93 | 96.34 |
| Bra020462.1-P | Field mustard | nucleus | 97.52 | 95.94 |
| CDY38270 | Canola | nucleus | 92.56 | 91.06 |
| CDY52738 | Canola | cytosol | 60.33 | 88.48 |
| CDX88610 | Canola | nucleus | 88.84 | 87.4 |
| CDY11882 | Canola | nucleus | 86.78 | 85.37 |
| AT5G57150.4 | Thale cress | nucleus | 82.23 | 75.38 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 60.33 | 59.84 |
| KRH12334 | Soybean | nucleus | 57.85 | 57.61 |
| KRH37338 | Soybean | nucleus | 57.85 | 57.38 |
| CDY46719 | Canola | nucleus | 59.09 | 54.17 |
| CDY30182 | Canola | nucleus | 54.55 | 54.1 |
| CDY43542 | Canola | nucleus | 56.2 | 51.71 |
| KRH19109 | Soybean | nucleus | 49.17 | 51.52 |
| CDX68608 | Canola | nucleus | 55.79 | 51.33 |
| Solyc07g018010.2.1 | Tomato | nucleus | 53.31 | 50.99 |
| PGSC0003DMT400010463 | Potato | nucleus | 52.89 | 50.79 |
| PGSC0003DMT400044959 | Potato | nucleus | 46.28 | 48.48 |
| Solyc05g014590.2.1 | Tomato | nucleus | 44.63 | 46.75 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 47.52 | 44.23 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 37.6 | 43.33 |
| KRH02772 | Soybean | nucleus | 54.55 | 38.82 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 43.8 | 38.13 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 43.39 | 37.77 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 42.98 | 37.41 |
| Zm00001d024522_P001 | Maize | nucleus | 39.67 | 37.21 |
| Zm00001d025141_P003 | Maize | nucleus | 38.43 | 35.5 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 22.73 | 34.81 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 43.8 | 34.75 |
| EES14602 | Sorghum | nucleus | 40.5 | 34.03 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 37.6 | 33.96 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 37.6 | 33.21 |
| Os04t0301500-01 | Rice | nucleus | 40.91 | 31.94 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 38.84 | 31.86 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 33.88 | 30.94 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 30.17 | 30.93 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 31.82 | 30.08 |
| TraesCSU01G138900.1 | Wheat | nucleus | 31.82 | 29.96 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 31.82 | 29.96 |
| TraesCSU01G138400.2 | Wheat | nucleus | 30.99 | 29.88 |
| Zm00001d004095_P001 | Maize | nucleus | 36.78 | 28.99 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 30.58 | 28.91 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 18.18 | 28.76 |
| EES05013 | Sorghum | nucleus | 33.47 | 28.72 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 29.75 | 28.69 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 30.99 | 27.68 |
| Os04t0300600-00 | Rice | cytosol | 33.47 | 27.46 |
| CDY19416 | Canola | nucleus | 20.25 | 26.49 |
| CDX98033 | Canola | nucleus | 20.25 | 26.49 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 31.41 | 26.03 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 28.93 | 25.55 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 33.06 | 24.69 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 32.23 | 24.68 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 33.47 | 21.77 |
| CDY31199 | Canola | nucleus | 25.62 | 19.81 |
| CDX83286 | Canola | nucleus | 25.62 | 19.81 |
| CDY30505 | Canola | nucleus | 25.62 | 19.75 |
| CDX77160 | Canola | nucleus | 25.62 | 19.62 |
| CDX71377 | Canola | nucleus | 25.21 | 19.3 |
| CDY04543 | Canola | nucleus | 24.79 | 18.99 |
| CDY37835 | Canola | nucleus | 23.55 | 15.92 |
| CDX97027 | Canola | nucleus | 19.42 | 15.77 |
| CDY69978 | Canola | nucleus | 23.14 | 15.64 |
| CDY08769 | Canola | nucleus | 22.73 | 15.32 |
| CDX69821 | Canola | nucleus | 19.01 | 15.18 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 11.16 | 13.37 |
| CDY34878 | Canola | cytosol | 20.66 | 13.02 |
| CDY54227 | Canola | nucleus | 20.25 | 12.89 |
| CDY37964 | Canola | nucleus | 21.07 | 12.56 |
| CDY34601 | Canola | nucleus | 22.73 | 12.39 |
| CDY21073 | Canola | nucleus | 21.9 | 12.3 |
| CDX93399 | Canola | nucleus | 20.66 | 12.2 |
| CDY28529 | Canola | nucleus | 21.49 | 11.85 |
| CDY48974 | Canola | nucleus | 21.9 | 11.06 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 4.55 | 11.0 |
| CDX89760 | Canola | nucleus | 25.62 | 10.92 |
| CDY02227 | Canola | nucleus | 25.21 | 10.74 |
| CDY31399 | Canola | nucleus | 24.79 | 10.58 |
| CDX71316 | Canola | nucleus | 23.97 | 10.21 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HWP1 | UniProt:A0A078HWP1 | EnsemblPlants:CDY42237 | ProteinID:CDY42237 |
| ProteinID:CDY42237.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00074458001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEB044 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g11780DBnaC02g11780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWP1]
Coordinates
chrLK032519:+:40158..46338
Molecular Weight (calculated)
27484.5 Da
IEP (calculated)
4.617
GRAVY (calculated)
-0.497
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQN
101: EESKLEAKIR ELESTPKSSL SFSKDFDPDL LVPVTSKKMK QLDSGSSRSL IEVIELKVKS MGERIMVVNV KCNKRTDTMV KLCEVFESLN LKILTSNLNS
201: FSGMIFNTLF IEADEEEQEV VRLKIETGIG AYNETQSPTW SI
101: EESKLEAKIR ELESTPKSSL SFSKDFDPDL LVPVTSKKMK QLDSGSSRSL IEVIELKVKS MGERIMVVNV KCNKRTDTMV KLCEVFESLN LKILTSNLNS
201: FSGMIFNTLF IEADEEEQEV VRLKIETGIG AYNETQSPTW SI
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.