CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013041.1-P	Field mustard	nucleus	99.82	99.82
CDX89760	Canola	nucleus	97.01	97.01
CDY31399	Canola	nucleus	89.96	90.12
CDX71316	Canola	nucleus	88.91	88.91
AT2G16910.1	Thale cress	nucleus	88.56	88.09
VIT_01s0127g00860.t01	Wine grape	nucleus	48.06	44.61
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.18	43.0
KRH36073	Soybean	nucleus	41.73	41.51
VIT_03s0038g02540.t01	Wine grape	nucleus	47.36	41.45
GSMUA_Achr3P00640_001	Banana	nucleus	20.77	39.6
KRG90676	Soybean	extracellular, vacuole	40.14	39.51
Solyc08g062780.1.1	Tomato	nucleus	40.67	38.76
PGSC0003DMT400021165	Potato	nucleus	28.35	37.01
CDY19416	Canola	nucleus	11.8	36.22
CDX98033	Canola	nucleus	11.8	36.22
CDY54227	Canola	nucleus	23.06	34.47
Os02t0120500-01	Rice	nucleus	32.75	33.7
TraesCS6B01G095700.1	Wheat	nucleus	31.51	32.37
TraesCS6A01G071300.1	Wheat	nucleus	31.34	32.36
CDY34878	Canola	cytosol	21.83	32.29
TraesCS6D01G069400.1	Wheat	nucleus	31.34	32.13
HORVU6Hr1G012760.1	Barley	nucleus	31.51	32.08
HORVU6Hr1G012730.1	Barley	nucleus	31.51	32.08
CDX93399	Canola	nucleus	23.06	31.95
TraesCS6B01G095600.1	Wheat	nucleus	30.99	31.83
CDY37964	Canola	nucleus	22.71	31.77
TraesCS6D01G069300.1	Wheat	nucleus	30.99	31.6
TraesCS6A01G071200.1	Wheat	nucleus	30.63	31.41
GSMUA_Achr1P07330_001	Banana	nucleus	23.06	31.04
KXG29315	Sorghum	nucleus	31.16	31.0
Zm00001d053895_P001	Maize	nucleus	29.93	27.2
CDY38270	Canola	nucleus	11.09	25.61
CDY42237	Canola	nucleus	10.74	25.21
CDY47924	Canola	nucleus	10.74	24.8
CDX88610	Canola	nucleus	10.21	23.58
CDX97027	Canola	nucleus	12.32	23.49
CDY30182	Canola	nucleus	9.86	22.95
CDY69978	Canola	nucleus	14.44	22.91
CDY08769	Canola	nucleus	14.44	22.84
CDY11882	Canola	nucleus	9.86	22.76
CDY37835	Canola	nucleus	14.26	22.63
CDX69821	Canola	nucleus	11.97	22.44
CDY52738	Canola	cytosol	6.51	22.42
CDY46719	Canola	nucleus	10.21	21.97
CDY43542	Canola	nucleus	10.04	21.67
CDY30505	Canola	nucleus	11.97	21.66
CDX71377	Canola	nucleus	11.97	21.52
CDY04543	Canola	nucleus	11.97	21.52
CDX77160	Canola	nucleus	11.97	21.52
CDY31199	Canola	nucleus	11.8	21.41
CDX68608	Canola	nucleus	9.86	21.29
CDX83286	Canola	nucleus	11.62	21.09
CDY21073	Canola	nucleus	15.49	20.42
CDX99537	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	7.22	20.3
CDY28529	Canola	nucleus	15.67	20.27
CDX97028	Canola	cytosol, plastid, vacuole	3.52	20.0
CDY34601	Canola	nucleus	15.49	19.82
CDY48974	Canola	nucleus	16.2	19.21
CDY03557	Canola	cytosol, nucleus, plastid	4.23	15.19

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078EM49	EnsemblPlants:CDY02227	ProteinID:CDY02227	ProteinID:CDY02227.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00113645001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDAE27
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaA03g39400D

Coordinates

chrLK031932:-:834680..837285

Molecular Weight (calculated)

64511.5 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.756

Length

568 amino acids

Sequence
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTQLIE EAGTEEFSFG SCRDVMFHHP RTKSCEVLSH LPSSIPLDSG IYAETLLTNQ
101: TGWLTESSEP GFMQETICTR VLVPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMVGDEV ESKPYGMLLP GDIHQKGSSK DEEMMNLPSP
201: YDISADQIRL NFLPQMNDYE SQQHLKMKSD YDHHHQTLGY DLPENGNNMN PFNTVAEEGM SVMGEASLLV NEQQVGNDKE MNENATGSDC SDQIDDEDDP
301: KCKKKTGKHT QAKNLHAERR RRKKLNDRLY ALRSLVPRIT KLDRASILGD AINYVKELQN EAKELQDELE DNSETEDGSN RQQGGMSMNG TVLTGFHQGL
401: SCNSNLPDMK QDVDLENCND KGQEMEPQVD VAHLDGREFF VKVICEYKPG GFTRLMEALD SLGLEVTNAN TTRFLSLVSN VFKVEKNDSE MVPAEHVRNS
501: LLEITRNTSR GWHDDQMATG SIQNEKNEVG YQHYDDHHHH GGHHQLHDHQ MNQSAHHHHQ HINHYQNQ

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.