Factsheet for Zm00001d053895_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29315	Sorghum	nucleus	77.92	85.29
TraesCS6A01G071300.1	Wheat	nucleus	54.56	62.0
TraesCS6B01G095600.1	Wheat	nucleus	54.24	61.3
TraesCS6A01G071200.1	Wheat	nucleus	54.08	61.01
TraesCS6D01G069300.1	Wheat	nucleus	54.24	60.86
TraesCS6D01G069400.1	Wheat	nucleus	53.76	60.65
TraesCS6B01G095700.1	Wheat	nucleus	53.6	60.58
HORVU6Hr1G012730.1	Barley	nucleus	54.08	60.57
HORVU6Hr1G012760.1	Barley	nucleus	54.08	60.57
Os02t0120500-01	Rice	nucleus	51.36	58.15
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	18.72	39.93
GSMUA_Achr3P00640_001	Banana	nucleus	17.28	36.24
Solyc08g062780.1.1	Tomato	nucleus	28.8	30.2
AT2G16910.1	Thale cress	nucleus	27.52	30.12
CDY31399	Canola	nucleus	27.2	29.98
CDY02227	Canola	nucleus	27.2	29.93
Bra013041.1-P	Field mustard	nucleus	27.2	29.93
VIT_01s0127g00860.t01	Wine grape	nucleus	29.28	29.9
PGSC0003DMT400021165	Potato	nucleus	20.8	29.89
Bra002004.1-P	Field mustard	nucleus	27.04	29.81
CDX89760	Canola	nucleus	27.04	29.75
CDX71316	Canola	nucleus	27.04	29.75
KRG90676	Soybean	extracellular, vacuole	27.36	29.64
GSMUA_Achr1P07330_001	Banana	nucleus	20.0	29.62
KRH36073	Soybean	nucleus	27.04	29.6
VIT_03s0038g02540.t01	Wine grape	nucleus	29.92	28.81
Zm00001d025141_P003	Maize	nucleus	10.4	24.81
Zm00001d004095_P001	Maize	nucleus	11.36	23.13
Zm00001d024522_P001	Maize	nucleus	9.12	22.09
Zm00001d036382_P001	Maize	nucleus	10.56	20.89
Zm00001d014814_P002	Maize	plastid	11.52	19.62
Zm00001d049294_P001	Maize	nucleus	15.04	18.15
Zm00001d027546_P001	Maize	nucleus	10.4	17.66
Zm00001d004007_P001	Maize	nucleus	10.08	17.6
Zm00001d042263_P001	Maize	nucleus	11.68	17.46
Zm00001d007382_P001	Maize	nucleus	14.24	17.15
Zm00001d025205_P001	Maize	nucleus	10.24	16.8

Protein Annotations

EntrezGene:100274330	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:AQK60669.1	EMBL:BT067785	UniProt:C0PHL6
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF11
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000195CE03	EnsemblPlantsGene:Zm00001d053895	EnsemblPlants:Zm00001d053895_P001	EnsemblPlants:Zm00001d053895_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 51Transcription factor ABORTED MICROSPORES

Coordinates

chr4:-:243230105..243233143

Molecular Weight (calculated)

65892.1 Da

IEP (calculated)

4.259

GRAVY (calculated)

-0.299

Length

625 amino acids

Sequence
(BLAST)

001: MTSAGDPISI LIPDTQARPR NPRACMLPAD AYLRFVFMAA AAYCCECDVQ AAAGTVLQSS GEAIVAGAMG GGVHHHHPCV AADGDGAGAG PGPASVEAAL
101: RPLVGVDAWD YCVYWRLSPD QRFLEMAGFC CSSQFEAQLP ALGDLPPSIQ LDSSSAGMHA EAMVSNQPIW QSSRVPELQT GYSSGMVQEP GSSGGPRTRL
201: LVPVAGGLVE LFAARYMAEE EQMAELVMAQ CGVPSGGEGG AWPPGFAWDG GASDASRGMY GDAVPPSLSL FDAAGSVAAD PFQAVQQAPG AGGGGVDDVA
301: GWQYAAAAGS ELEAVQLQQE QQPRDADSGS EVSDMQGDPE DDGDGDAQGR GGGKGGGKRQ QCKNLEAERK RRKKLNERLY KLRSLVPNIS KMDRAAILGD
401: AIDYIVGLQN QVKALQDELE DPADGAGAPD VLLDHPPPAS LVGLENDESP PTSHQHPLAG TKRARAAAEE EEEEKGNDME PQVEVRQVEA NEFFLQMLCE
501: RRPGRFVQIM DSIADLGLEV TNVNVTSHES LVLNVFRAAR RDNEVAVQAD RLRDSLLEVM REPYGVWSSS APPVGMSGSG IADVKHDSVD MKLDGIIDGQ
601: AAPSVAVGVS EDHYGGYNHL LQYLA

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.