Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G012760.1 | Barley | nucleus | 100.0 | 100.0 |
| TraesCS6B01G095600.1 | Wheat | nucleus | 92.11 | 92.95 |
| TraesCS6D01G069400.1 | Wheat | nucleus | 91.76 | 92.42 |
| TraesCS6B01G095700.1 | Wheat | nucleus | 91.58 | 92.41 |
| TraesCS6A01G071300.1 | Wheat | nucleus | 90.86 | 92.18 |
| TraesCS6D01G069300.1 | Wheat | nucleus | 91.76 | 91.92 |
| TraesCS6A01G071200.1 | Wheat | nucleus | 91.04 | 91.7 |
| Os02t0120500-01 | Rice | nucleus | 59.68 | 60.33 |
| KXG29315 | Sorghum | nucleus | 61.47 | 60.07 |
| Zm00001d053895_P001 | Maize | nucleus | 60.57 | 54.08 |
| HORVU7Hr1G118860.1 | Barley | plastid | 6.27 | 50.0 |
| GSMUA_Achr1P07450_001 | Banana | nucleus, plastid | 22.04 | 41.98 |
| GSMUA_Achr3P00640_001 | Banana | nucleus | 20.61 | 38.59 |
| GSMUA_Achr1P07330_001 | Banana | nucleus | 24.73 | 32.7 |
| CDY31399 | Canola | nucleus | 32.62 | 32.1 |
| Bra002004.1-P | Field mustard | nucleus | 32.44 | 31.92 |
| AT2G16910.1 | Thale cress | nucleus | 32.62 | 31.87 |
| CDX71316 | Canola | nucleus | 32.26 | 31.69 |
| CDY02227 | Canola | nucleus | 32.08 | 31.51 |
| Bra013041.1-P | Field mustard | nucleus | 32.08 | 31.51 |
| KRH36073 | Soybean | nucleus | 32.08 | 31.35 |
| VIT_01s0127g00860.t01 | Wine grape | nucleus | 34.23 | 31.21 |
| CDX89760 | Canola | nucleus | 31.36 | 30.81 |
| KRG90676 | Soybean | extracellular, vacuole | 31.36 | 30.33 |
| Solyc08g062780.1.1 | Tomato | nucleus | 31.9 | 29.87 |
| PGSC0003DMT400021165 | Potato | nucleus | 23.12 | 29.66 |
| VIT_03s0038g02540.t01 | Wine grape | nucleus | 34.41 | 29.58 |
| HORVU7Hr1G118740.3 | Barley | nucleus | 13.98 | 23.64 |
| HORVU3Hr1G034540.16 | Barley | plastid | 12.19 | 22.9 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 12.19 | 22.3 |
| HORVU7Hr1G062400.4 | Barley | plastid | 6.99 | 22.03 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 9.5 | 20.62 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 13.98 | 20.58 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 8.78 | 19.52 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 12.19 | 19.15 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 8.96 | 18.25 |
| HORVU4Hr1G032690.2 | Barley | nucleus, plastid | 9.86 | 17.8 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 16.85 | 17.6 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 9.5 | 17.32 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 10.04 | 17.28 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 4.3 | 15.69 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G012730.1 | EnsemblPlantsGene:HORVU6Hr1G012730 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR31945 |
| PANTHER:PTHR31945:SF11 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B481036 | UniProt:A0A287TCH8 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:25125406..25128502
Molecular Weight (calculated)
59018.5 Da
IEP (calculated)
4.386
GRAVY (calculated)
-0.509
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGDYHQQ SIIGGAAAHG HGGGGGAAVE AALRPLVGGS HGWDYCIYWR LSPDQRFLEM TGFCCSAEFE AEVAALGEIP ATIPLDSSSI GMHAQALLSN
101: QPIWQSSGGA PGPDLLTGYE AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD AAAAADPGRL YAAASLNLFD
201: GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR
301: RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE
401: AGDEEEKEAE DQDMEPQVEV RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA AVPADRVRDS LLEVTREMYG
501: GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH HQVLGGYHHQ HLQYLAMD
101: QPIWQSSGGA PGPDLLTGYE AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD AAAAADPGRL YAAASLNLFD
201: GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR
301: RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE
401: AGDEEEKEAE DQDMEPQVEV RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA AVPADRVRDS LLEVTREMYG
501: GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH HQVLGGYHHQ HLQYLAMD
001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q
Arabidopsis Description
AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.