Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G476000.1 | Wheat | nucleus | 96.31 | 96.31 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 96.31 | 95.8 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 96.04 | 95.04 |
| CDX98033 | Canola | nucleus | 36.41 | 74.59 |
| CDY19416 | Canola | nucleus | 36.15 | 74.05 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 42.48 | 73.85 |
| Os01t0928000-01 | Rice | nucleus | 71.77 | 71.39 |
| EES04142 | Sorghum | nucleus | 69.39 | 69.95 |
| Zm00001d042263_P001 | Maize | nucleus | 69.66 | 63.16 |
| HORVU7Hr1G118860.1 | Barley | plastid | 11.35 | 61.43 |
| KRG94685 | Soybean | nucleus | 46.17 | 41.08 |
| Bra034246.1-P | Field mustard | nucleus | 45.12 | 40.91 |
| CDY28529 | Canola | nucleus | 45.65 | 39.41 |
| Bra032947.1-P | Field mustard | nucleus | 45.65 | 39.14 |
| AT1G12860.1 | Thale cress | nucleus | 46.17 | 38.89 |
| Bra019794.1-P | Field mustard | nucleus | 43.27 | 38.59 |
| Bra016749.1-P | Field mustard | nucleus | 43.8 | 38.34 |
| CDY21073 | Canola | nucleus | 43.54 | 38.28 |
| KRH06841 | Soybean | nucleus | 45.38 | 38.22 |
| KRH08406 | Soybean | nucleus | 44.06 | 37.61 |
| CDY34601 | Canola | nucleus | 43.8 | 37.39 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 52.51 | 36.99 |
| CDY48974 | Canola | nucleus | 46.17 | 36.53 |
| AT3G26744.1 | Thale cress | nucleus | 47.23 | 36.23 |
| Bra025226.1-P | Field mustard | nucleus | 47.49 | 36.22 |
| GSMUA_Achr10P... | Banana | nucleus | 48.02 | 35.76 |
| Solyc03g118310.2.1 | Tomato | nucleus | 46.97 | 33.71 |
| HORVU7Hr1G074490.3 | Barley | nucleus | 47.23 | 33.52 |
| PGSC0003DMT400036951 | Potato | nucleus | 46.17 | 31.76 |
| HORVU3Hr1G034540.16 | Barley | plastid | 21.9 | 27.95 |
| HORVU7Hr1G118740.3 | Barley | nucleus | 23.75 | 27.27 |
| HORVU7Hr1G062400.4 | Barley | plastid | 12.66 | 27.12 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 21.9 | 23.38 |
| HORVU4Hr1G032690.2 | Barley | nucleus, plastid | 17.41 | 21.36 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 13.98 | 20.62 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 12.4 | 18.73 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 14.25 | 17.7 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 12.4 | 17.15 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 11.35 | 14.05 |
| HORVU6Hr1G012760.1 | Barley | nucleus | 20.58 | 13.98 |
| HORVU6Hr1G012730.1 | Barley | nucleus | 20.58 | 13.98 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 11.87 | 13.89 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 5.01 | 12.42 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | EMBL:AK355118 | UniProt:F2CU16 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU3Hr1G096460 | EnsemblPlants:HORVU3Hr1G096460.5 |
| InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 |
| SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI0002004865 | InterPro:bHLH_dom | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CU16]
Coordinates
chrchr3H:+:653292227..653295393
Molecular Weight (calculated)
39468.0 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.187
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPAAVVGA EKEDELVGGG GGDWGYLTSE AMATAGFPAF GFPCGTRGGV TPAPNSASLL MSMEHAALFD YNAAFPSSSS SAVPAPPAYH DFGSGGNPFS
101: VDAPPFLLEA PPPLTAGAGG QKGGFLAPPL SAFGDGMGWD DEDELDQQSM DASSLGVSAS LENAAVGAPG GGGGGGNGKG KKKGMPAKNL MAERRRRKKL
201: NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRISDL HSELESAPSS AALGGPSTAN TFLPSTPTLQ PFPGRIKEER CPPAPFPSPS GQQATVEVRM
301: REGQAVNIHM FCARRPGILL STMRALDSLG LDIEQAVISC FDGFAMDVFR AEQCREGPGL LPEEIKAVLL HCAGLQNAM
101: VDAPPFLLEA PPPLTAGAGG QKGGFLAPPL SAFGDGMGWD DEDELDQQSM DASSLGVSAS LENAAVGAPG GGGGGGNGKG KKKGMPAKNL MAERRRRKKL
201: NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRISDL HSELESAPSS AALGGPSTAN TFLPSTPTLQ PFPGRIKEER CPPAPFPSPS GQQATVEVRM
301: REGQAVNIHM FCARRPGILL STMRALDSLG LDIEQAVISC FDGFAMDVFR AEQCREGPGL LPEEIKAVLL HCAGLQNAM
001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV
Arabidopsis Description
SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.