CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016749.1-P	Field mustard	nucleus	99.77	99.31
CDX98033	Canola	nucleus	39.44	91.89
CDY19416	Canola	nucleus	39.21	91.35
CDY34601	Canola	nucleus	89.79	87.16
AT1G12860.1	Thale cress	nucleus	77.73	74.44
GSMUA_Achr6P08070_001	Banana	nucleus	35.96	71.1
CDY28529	Canola	nucleus	58.47	57.4
CDY48974	Canola	nucleus	60.79	54.7
VIT_14s0068g01200.t01	Wine grape	nucleus	57.31	45.91
KRG94685	Soybean	nucleus	44.78	45.31
EES04142	Sorghum	nucleus	39.44	45.21
TraesCS3B01G476000.1	Wheat	nucleus	38.52	43.8
TraesCS3D01G434900.1	Wheat	nucleus	38.52	43.57
HORVU3Hr1G096460.5	Barley	nucleus	38.28	43.54
TraesCS3A01G442200.1	Wheat	nucleus	38.28	43.08
Os01t0928000-01	Rice	nucleus	38.05	43.04
GSMUA_Achr10P...	Banana	nucleus	50.58	42.83
KRH06841	Soybean	nucleus	44.55	42.67
KRH08406	Soybean	nucleus	42.0	40.77
Zm00001d042263_P001	Maize	nucleus	39.44	40.67
Solyc03g118310.2.1	Tomato	nucleus	45.48	37.12
PGSC0003DMT400036951	Potato	nucleus	45.24	35.39
CDX97028	Canola	cytosol, plastid, vacuole	7.66	33.0
CDX97027	Canola	nucleus	19.03	27.52
CDX69821	Canola	nucleus	19.03	27.06
CDY08769	Canola	nucleus	22.51	27.02
CDY69978	Canola	nucleus	22.27	26.82
CDY37835	Canola	nucleus	22.04	26.54
CDX99537	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	12.3	26.24
CDY38270	Canola	nucleus	12.76	22.36
CDY42237	Canola	nucleus	12.3	21.9
CDY47924	Canola	nucleus	12.3	21.54
CDY30182	Canola	nucleus	11.6	20.49
CDY11882	Canola	nucleus	11.6	20.33
CDY43542	Canola	nucleus	12.3	20.15
CDX88610	Canola	nucleus	11.37	19.92
CDX68608	Canola	nucleus	12.06	19.77
CDY46719	Canola	nucleus	12.06	19.7
CDX77160	Canola	nucleus	13.92	18.99
CDY30505	Canola	nucleus	13.69	18.79
CDY52738	Canola	cytosol	6.96	18.18
CDY04543	Canola	nucleus	13.23	18.04
CDX71377	Canola	nucleus	13.23	18.04
CDY31199	Canola	nucleus	12.99	17.89
CDX83286	Canola	nucleus	12.76	17.57
CDY31399	Canola	nucleus	20.65	15.7
CDY02227	Canola	nucleus	20.42	15.49
CDX71316	Canola	nucleus	20.42	15.49
CDX89760	Canola	nucleus	20.19	15.32
CDY03557	Canola	cytosol, nucleus, plastid	5.34	14.56
CDY54227	Canola	nucleus	11.83	13.42
CDX93399	Canola	nucleus	12.53	13.17
CDY37964	Canola	nucleus	11.83	12.56
CDY34878	Canola	cytosol	11.14	12.5

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	GO:A0A078G8Q3	UniProt:A0A078G8Q3	EnsemblPlants:CDY21073
ProteinID:CDY21073	ProteinID:CDY21073.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00015245001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF13	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDBE92	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA08g24520DBnaA08g24520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8Q3]

Coordinates

chrLK032115:+:555168..557427

Molecular Weight (calculated)

47811.2 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.597

Length

431 amino acids

Sequence
(BLAST)

001: MNGNGTWLHD AGEPSQANDN DESRTWVRNT EENWFSNPQP LNPLHNNQND FRFNSGAFPS NPSENLLLLL QQEQQQQQQQ SFLTTKACMA SLLNIPTSNT
101: NNNINSNPFD ELGFSSGFLG QTNQTPLSMS FSGMSSPPDF LSSRSIPPPE NSSFTPLEFA GVANGVFENR AKVLKPLEVL ASSTSQPTLF QKRAAMRQSS
201: SSKTCNSESS SEMRRSSYEP DIDDTSTGII DISDEHNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH
301: TELESTAPPS SSSLNPLTPT TQTLSYRVKE ELCPSSSFPS PRGEQARIEV KLREGKAVNI HMFCGRRPGL LLSTMRALDN LGLDVQQAVV SCFNGFALDV
401: FRAEQCQEGH DVVPEQIKAV LLDTVGYTGL V

Best Arabidopsis Sequence Match ( AT1G12860.1 )
(BLAST)

001: MNSDGVWLDG SGESPEVNNG EAASWVRNPD EDWFNNPPPP QHTNQNDFRF NGGFPLNPSE NLLLLLQQSI DSSSSSSPLL HPFTLDAASQ QQQQQQQQQE
101: QSFLATKACI VSLLNVPTIN NNTFDDFGFD SGFLGQQFHG NHQSPNSMNF TGLNHSVPDF LPAPENSSGS CGLSPLFSNR AKVLKPLQVM ASSGSQPTLF
201: QKRAAMRQSS SSKMCNSESS SEMRKSSYER EIDDTSTGII DISGLNYESD DHNTNNNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS
301: ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP QTLSYRVKEE LCPSSSLPSP KGQQPRVEVR LREGKAVNIH MFCGRRPGLL LSTMRALDNL
401: GLDVQQAVIS CFNGFALDVF RAEQCQEDHD VLPEQIKAVL LDTAGYAGLV

Arabidopsis Description

SCRM2Transcription factor SCREAM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.