Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG27392 | Sorghum | cytosol | 42.29 | 99.38 |
| Zm00001d042263_P001 | Maize | nucleus | 92.55 | 83.25 |
| CDX98033 | Canola | nucleus | 36.44 | 74.05 |
| CDY19416 | Canola | nucleus | 36.17 | 73.51 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 42.29 | 72.94 |
| Os01t0928000-01 | Rice | nucleus | 73.14 | 72.18 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 71.28 | 70.34 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 71.54 | 70.23 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 70.74 | 70.18 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 69.95 | 69.39 |
| Bra034246.1-P | Field mustard | nucleus | 46.28 | 41.63 |
| KRG94685 | Soybean | nucleus | 45.21 | 39.91 |
| Bra032947.1-P | Field mustard | nucleus | 46.81 | 39.82 |
| CDY28529 | Canola | nucleus | 46.28 | 39.64 |
| CDY21073 | Canola | nucleus | 45.21 | 39.44 |
| Bra019794.1-P | Field mustard | nucleus | 44.41 | 39.29 |
| Bra016749.1-P | Field mustard | nucleus | 45.21 | 39.26 |
| AT1G12860.1 | Thale cress | nucleus | 46.81 | 39.11 |
| CDY34601 | Canola | nucleus | 45.48 | 38.51 |
| CDY48974 | Canola | nucleus | 47.34 | 37.16 |
| KRH06841 | Soybean | nucleus | 44.41 | 37.11 |
| AT3G26744.1 | Thale cress | nucleus | 47.61 | 36.23 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 51.6 | 36.06 |
| Bra025226.1-P | Field mustard | nucleus | 47.07 | 35.61 |
| KRH08406 | Soybean | nucleus | 42.02 | 35.59 |
| GSMUA_Achr10P... | Banana | nucleus | 46.81 | 34.58 |
| Solyc03g118310.2.1 | Tomato | nucleus | 47.34 | 33.71 |
| EES08566 | Sorghum | nucleus | 44.68 | 32.31 |
| PGSC0003DMT400036951 | Potato | nucleus | 44.95 | 30.67 |
| EER92904 | Sorghum | nucleus | 23.67 | 23.86 |
| EER88977 | Sorghum | plastid | 24.2 | 23.82 |
| EES05013 | Sorghum | nucleus | 15.16 | 20.21 |
| EES14602 | Sorghum | nucleus | 14.63 | 19.1 |
| KXG26070 | Sorghum | nucleus | 13.83 | 14.21 |
| KXG29315 | Sorghum | nucleus | 19.95 | 13.13 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | EntrezGene:8059393 | UniProt:C5XH03 | ncoils:Coil |
| EnsemblPlants:EES04142 | ProteinID:EES04142 | ProteinID:EES04142.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF2 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3003G412200 | SUPFAM:SSF47459 | UniParc:UPI0001A85627 |
| RefSeq:XP_002459022.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:71949427..71951773
Molecular Weight (calculated)
39437.5 Da
IEP (calculated)
4.488
GRAVY (calculated)
-0.208
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSAEAKLV DEIAGGGAEG DWGYLGSDGM GSGSYPGYPF PRDVLSTPTS ASLLLSMDPA ALFDFNSTFP PSSSAAATAG SALPAFHDFN CINPFDDAGQ
101: FLGGPPPLPP AVAAQQQGQK GGFFAPPPGS DFNDTGMSWD DEDEIDQSVD ASSMAISASM ENAAGAAVGG SGVGGGSGRG KKKGMPAKNL MAERRRRKKL
201: NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRISEL HNELESASSS SFVGPTSASF NPSTPTLQAF PGQVKEELCP GSFPSPTGQQ ATVEVRMREG
301: HAVNIHMFCA RRPGILLSTM TALDSLGLDI EQAVISCFNG FAMDVFRAEQ CADGPGMVPE EIKAVLMHTA GLHNAM
101: FLGGPPPLPP AVAAQQQGQK GGFFAPPPGS DFNDTGMSWD DEDEIDQSVD ASSMAISASM ENAAGAAVGG SGVGGGSGRG KKKGMPAKNL MAERRRRKKL
201: NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRISEL HNELESASSS SFVGPTSASF NPSTPTLQAF PGQVKEELCP GSFPSPTGQQ ATVEVRMREG
301: HAVNIHMFCA RRPGILLSTM TALDSLGLDI EQAVISCFNG FAMDVFRAEQ CADGPGMVPE EIKAVLMHTA GLHNAM
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.