CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014814_P002	Maize	plastid	85.6	89.1
Zm00001d036382_P001	Maize	nucleus	67.8	81.96
TraesCS7A01G543300.1	Wheat	nucleus	65.71	76.29
TraesCS7D01G529200.1	Wheat	nucleus	66.23	74.85
HORVU7Hr1G118740.3	Barley	nucleus	64.14	74.24
TraesCS7B01G465400.1	Wheat	nucleus	65.44	71.84
VIT_00s2739g00010.t01	Wine grape	cytosol	15.45	70.24
HORVU3Hr1G034540.16	Barley	plastid	47.64	61.28
EER92904	Sorghum	nucleus	39.53	40.48
VIT_11s0037g01310.t01	Wine grape	cytosol	11.26	36.75
KXG27392	Sorghum	cytosol	13.61	32.5
EES04142	Sorghum	nucleus	23.82	24.2
EES08566	Sorghum	nucleus	23.56	17.31
EES05013	Sorghum	nucleus	12.57	17.02
EES14602	Sorghum	nucleus	11.78	15.62
KXG26070	Sorghum	nucleus	12.57	13.11
KXG29315	Sorghum	nucleus	18.59	12.43

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8065008	UniProt:C5Z1Y7	ncoils:Coil	EnsemblPlants:EER88977
ProteinID:EER88977	ProteinID:EER88977.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945
PANTHER:PTHR31945:SF15	SMART:SM00353	EnsemblPlantsGene:SORBI_3010G269700	SUPFAM:SSF47459	UniParc:UPI0001A891CC	RefSeq:XP_002437610.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:60405194..60407174

Molecular Weight (calculated)

40921.9 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.143

Length

382 amino acids

Sequence
(BLAST)

001: MALASSTLPL PLTTTTPPSS SSQDIAATTT SFCAYPLAFF GFEEKAAAME LDEQAFLEEI LSLRRDATWD CNAMGDFFSP AAAMDCSFQD RQHQVPTVSV
101: LPTFTASYAQ PQPQPTAAPG FDCLSEVYGA AAAFGGPNAG DYGGEMGFLD VVEPKAAAAD GVGVGGAAAG LEVCKVEPVL AESGGAFGPG PGLGAAPTPA
201: PASKKKRVEG MPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL ERIKLLQEEI EEQQQEAPGM LSVCRELNPI EMVARNIPKF
301: DVERKEGGDT RVEIYCAAKP GLLLSTVSTL DTLGLDIQQC VISCFNDFGM HASCSEMQRD MISAEAIKQE LFNNAGYSGR CL

Best Arabidopsis Sequence Match ( AT5G65640.1 )
(BLAST)

001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L

Arabidopsis Description

BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.