CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049294_P001	Maize	nucleus	93.65	94.02
Os11t0523700-01	Rice	nucleus	72.5	71.95
TraesCS7D01G308300.1	Wheat	nucleus	71.35	70.53
TraesCS7B01G211600.1	Wheat	nucleus	70.96	70.15
TraesCS7A01G311800.1	Wheat	nucleus	70.0	69.87
HORVU7Hr1G074490.3	Barley	nucleus	69.23	67.42
KXG27392	Sorghum	cytosol	20.58	66.88
Zm00001d007382_P001	Maize	nucleus	64.81	64.93
EES04142	Sorghum	nucleus	32.31	44.68
VIT_01s0244g00130.t01	Wine grape	nucleus	43.46	43.8
EER92904	Sorghum	nucleus	17.5	24.4
EER88977	Sorghum	plastid	17.31	23.56
EES14602	Sorghum	nucleus	11.92	21.53
EES05013	Sorghum	nucleus	11.15	20.57
KXG26070	Sorghum	nucleus	12.88	18.31
KXG29315	Sorghum	nucleus	18.08	16.46

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EntrezGene:8064787	UniProt:C5Y390	ncoils:Coil
EnsemblPlants:EES08566	ProteinID:EES08566	ProteinID:EES08566.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF12	SMART:SM00353	EnsemblPlantsGene:SORBI_3005G131900	SUPFAM:SSF47459	UniParc:UPI0001A863EA
RefSeq:XP_002449578.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:57378736..57382568

Molecular Weight (calculated)

53726.6 Da

IEP (calculated)

4.850

GRAVY (calculated)

-0.205

Length

520 amino acids

Sequence
(BLAST)

001: MLPPFGNPLW VPEDVNDQQQ QHAPPPTPMG LVTVPAQQGH EEQNLLALAS AAAMGVGGVF SSPAVLDDDW CFDPVAAASA AGAQGHLLLA PPAPAPGAGS
101: QMFSLFNVGG ATFDVHGFDL GLGGLGGGAG GELVPFAGAG NASNSASFSL IPAGNAGFLG SFGGFGTAPA QMPDFGGLGG FDMFNNGAGS STAAPPPASV
201: SLTAPFSGRG KAAVLRPLEI FPPVGAQPTL FQKRALRRNA GEEDDDKKRK AEAITAAAGA SSAGGGDTVL DDADDDDGGS IDASGLNYDS EDARGVEDSE
301: KKDGKDSNAN STVTGGSTGD GKGKRKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQKI NDLQNELESS PSTASLPPTP
401: TSFHPLTPTL PTLPSRVKEE VCPSALPSPT SQQPRVEVRM REGRAVNIHM LCARRPGLLL SAMRAIEGLG LDVQQAVISC FNGFSLDIFK AELCNEGPGL
501: LPEEIKSVLL QSAGFHGVMP

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.