Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g014590.2.1 | Tomato | nucleus | 82.68 | 82.68 |
| PGSC0003DMT400010463 | Potato | nucleus | 65.37 | 59.92 |
| VIT_11s0052g00100.t01 | Wine grape | nucleus | 60.61 | 57.38 |
| KRH37338 | Soybean | nucleus | 55.84 | 52.87 |
| KRH12334 | Soybean | nucleus | 54.11 | 51.44 |
| KRH19109 | Soybean | nucleus | 47.62 | 47.62 |
| Bra002756.1-P | Field mustard | nucleus | 49.78 | 46.75 |
| CDY38270 | Canola | nucleus | 49.78 | 46.75 |
| CDY11882 | Canola | nucleus | 49.35 | 46.34 |
| CDX88610 | Canola | nucleus | 49.35 | 46.34 |
| Bra006831.1-P | Field mustard | nucleus | 49.35 | 46.34 |
| CDY42237 | Canola | nucleus | 48.48 | 46.28 |
| GSMUA_Achr6P30900_001 | Banana | nucleus | 41.56 | 45.71 |
| Bra020462.1-P | Field mustard | nucleus | 48.48 | 45.53 |
| CDY47924 | Canola | nucleus | 48.48 | 45.53 |
| CDY52738 | Canola | cytosol | 32.03 | 44.85 |
| GSMUA_Achr7P16000_001 | Banana | nucleus | 49.35 | 43.85 |
| CDY46719 | Canola | nucleus | 46.75 | 40.91 |
| CDY30182 | Canola | nucleus | 41.99 | 39.75 |
| Bra024115.1-P | Field mustard | nucleus | 41.99 | 39.75 |
| AT5G57150.4 | Thale cress | nucleus | 44.59 | 39.02 |
| CDY43542 | Canola | nucleus | 41.99 | 36.88 |
| CDX68608 | Canola | nucleus | 41.56 | 36.5 |
| KRH02772 | Soybean | nucleus | 52.81 | 35.88 |
| TraesCS2D01G270300.1 | Wheat | nucleus | 42.86 | 35.61 |
| TraesCS2B01G289900.1 | Wheat | nucleus | 42.86 | 35.61 |
| TraesCS2A01G271700.1 | Wheat | nucleus | 42.42 | 35.25 |
| Bra011152.1-P | Field mustard | nucleus | 37.66 | 35.08 |
| Zm00001d025141_P003 | Maize | nucleus | 39.39 | 34.73 |
| Zm00001d024522_P001 | Maize | nucleus | 38.1 | 34.11 |
| AT4G29930.3 | Thale cress | nucleus | 38.53 | 33.84 |
| HORVU2Hr1G066100.1 | Barley | cytosol, nucleus | 43.29 | 32.79 |
| EES14602 | Sorghum | nucleus | 40.69 | 32.64 |
| TraesCS2D01G270000.2 | Wheat | nucleus | 37.66 | 32.46 |
| TraesCS2B01G289700.2 | Wheat | nucleus | 38.1 | 32.12 |
| HORVU2Hr1G066090.2 | Barley | cytosol | 21.21 | 32.03 |
| TraesCS3B01G018400.1 | Wheat | nucleus | 35.93 | 31.32 |
| Os04t0300600-00 | Rice | cytosol | 39.83 | 31.19 |
| TraesCS5A01G533900.1 | Wheat | nucleus | 31.17 | 30.51 |
| TraesCS5A01G533200.1 | Wheat | nucleus | 32.9 | 29.69 |
| Os04t0301500-01 | Rice | nucleus | 39.39 | 29.35 |
| Zm00001d004095_P001 | Maize | nucleus | 38.96 | 29.32 |
| TraesCSU01G138900.1 | Wheat | nucleus | 32.47 | 29.18 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 19.91 | 29.11 |
| TraesCSU01G138400.2 | Wheat | nucleus | 31.6 | 29.08 |
| TraesCS4B01G364800.1 | Wheat | nucleus | 32.03 | 28.91 |
| HORVU4Hr1G087590.1 | Barley | nucleus | 32.03 | 28.79 |
| EES05013 | Sorghum | nucleus | 35.06 | 28.72 |
| TraesCS3A01G028200.3 | Wheat | nucleus | 33.33 | 28.41 |
| HORVU4Hr1G087610.1 | Barley | nucleus | 30.3 | 27.89 |
| GSMUA_Achr4P12700_001 | Banana | nucleus | 35.06 | 27.46 |
| TraesCS3A01G442600.1 | Wheat | nucleus | 32.9 | 26.03 |
| TraesCS3D01G435200.1 | Wheat | nucleus | 35.06 | 25.63 |
| HORVU2Hr1G066000.7 | Barley | nucleus | 29.87 | 25.18 |
| HORVU3Hr1G005500.3 | Barley | cytosol, nucleus | 34.63 | 24.69 |
| TraesCS3D01G017700.1 | Wheat | nucleus | 35.5 | 22.04 |
| PGSC0003DMT400048941 | Potato | nucleus | 25.11 | 18.59 |
| PGSC0003DMT400016360 | Potato | nucleus | 22.94 | 15.68 |
| PGSC0003DMT400005209 | Potato | nucleus | 16.88 | 15.12 |
| PGSC0003DMT400026937 | Potato | nucleus | 18.18 | 12.88 |
| PGSC0003DMT400078675 | Potato | nucleus | 18.61 | 12.84 |
| PGSC0003DMT400021165 | Potato | nucleus | 19.91 | 10.57 |
| PGSC0003DMT400036951 | Potato | nucleus | 24.24 | 10.16 |
| PGSC0003DMT400074075 | Potato | nucleus | 22.51 | 9.81 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400044959 | EnsemblPlantsGene:PGSC0003DMG400017440 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF26 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400017440 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002961E3D | UniProt:M1BGW8 | MapMan:15.5.32 | : |
Description
Basic helix-loop-helix (bHLH) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017440]
Coordinates
chr5:+:12056354..12058874
Molecular Weight (calculated)
26359.2 Da
IEP (calculated)
5.717
GRAVY (calculated)
-0.529
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEENNNYLE TTMFFQPDSY LDEPIISSYY DSSSPEGAQS SKNIVSERIR RNKLKEKLFA LRAHVPKITK MDKASIVKDA IAYIEELQNQ DRRIQGEISE
101: LESETSNKNS AHLQHETFDF SKPKRPTTLD EQQYGYHSSP IDVLKLRISS MRDKTVVVNL TCIKRRDTMV KLCDVFESLN IKIISATIFA SSGTLLHTAF
201: IEADEEESNL LKLRIETAIA SLNNRDSPMS S
101: LESETSNKNS AHLQHETFDF SKPKRPTTLD EQQYGYHSSP IDVLKLRISS MRDKTVVVNL TCIKRRDTMV KLCDVFESLN IKIISATIFA SSGTLLHTAF
201: IEADEEESNL LKLRIETAIA SLNNRDSPMS S
001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT LSIDSLY
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.