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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g091690.2.1 Tomato nucleus 93.13 94.83
PGSC0003DMT400026937 Potato nucleus 61.19 62.88
GSMUA_Achr7P03930_001 Banana nucleus 42.99 60.76
GSMUA_Achr1P26300_001 Banana nucleus 42.99 60.25
GSMUA_AchrUn_... Banana nucleus 40.6 57.38
GSMUA_Achr8P34120_001 Banana nucleus 45.37 53.15
PGSC0003DMT400016360 Potato nucleus 48.06 47.63
TraesCS4D01G328700.1 Wheat cytosol 20.6 47.26
AT5G10570.1 Thale cress nucleus 42.09 44.76
CDX97027 Canola nucleus 39.7 44.63
Bra009022.1-P Field mustard nucleus 40.3 44.55
AT5G65640.1 Thale cress nucleus 46.57 44.44
CDY69978 Canola nucleus 46.57 43.58
CDX69821 Canola nucleus 39.4 43.56
Bra031852.1-P Field mustard nucleus 46.27 43.3
Bra024404.1-P Field mustard nucleus 46.27 43.18
CDY08769 Canola nucleus 46.27 43.18
CDY37835 Canola nucleus 45.97 43.02
TraesCS4B01G331900.1 Wheat nucleus 35.52 39.02
Os03t0135700-01 Rice nucleus 40.9 38.7
EER92904 Sorghum nucleus 42.69 38.34
Zm00001d027546_P001 Maize nucleus 41.79 38.04
TraesCS4D01G328900.1 Wheat nucleus 38.81 37.36
TraesCS4D01G329100.1 Wheat nucleus 38.21 36.57
TraesCS4D01G328800.1 Wheat nucleus 38.51 36.54
TraesCS3A01G057900.1 Wheat nucleus 35.52 36.39
TraesCS5A01G503300.1 Wheat nucleus 38.21 36.26
TraesCS4D01G329000.2 Wheat nucleus 38.21 36.26
TraesCSU01G069400.1 Wheat nucleus 37.91 36.08
TraesCS5A01G503500.1 Wheat nucleus 37.91 36.08
PGSC0003DMT400005209 Potato nucleus 27.76 36.05
TraesCS4B01G332000.1 Wheat nucleus 37.31 36.02
HORVU4Hr1G080890.1 Barley nucleus 37.91 35.77
TraesCS3D01G058100.1 Wheat nucleus 31.34 35.47
TraesCS3A01G058000.1 Wheat nucleus 30.15 33.67
TraesCS3B01G070400.1 Wheat nucleus 29.55 32.46
TraesCS5A01G503400.1 Wheat nucleus 34.63 32.13
TraesCSU01G069300.1 Wheat nucleus 33.43 31.82
PGSC0003DMT400010463 Potato nucleus 15.82 21.03
PGSC0003DMT400036951 Potato nucleus 31.34 19.06
PGSC0003DMT400074075 Potato nucleus 29.85 18.87
PGSC0003DMT400044959 Potato nucleus 12.84 18.61
PGSC0003DMT400048941 Potato nucleus 15.82 16.99
PGSC0003DMT400021165 Potato nucleus 20.3 15.63
Protein Annotations
EntrezGene:102588068MapMan:15.5.32Gene3D:4.10.280.10ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638UniProt:M1D0J1
PFAM:PF00010EnsemblPlantsGene:PGSC0003DMG400030616PGSC:PGSC0003DMG400030616EnsemblPlants:PGSC0003DMT400078675PFscan:PS50888PANTHER:PTHR31945
PANTHER:PTHR31945:SF15SMART:SM00353SUPFAM:SSF47459UniParc:UPI000295DAC2RefSeq:XP_006357756.2InterPro:bHLH_dom
SEG:seg:::::
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030616]
Coordinates
chr2:+:42043191..42045006
Molecular Weight (calculated)
38419.3 Da
IEP (calculated)
5.323
GRAVY (calculated)
-0.612
Length
335 amino acids
Sequence
(BLAST)
001: MELTQQDFLE VVVSPRIESW NNTFANAWNI ESPTFYQQNP EFVPSNSSLL DLIMSPSQSN YFPCPDFQES SYPFLHSFNS TTTAPPQVID SSTYNNNTNI
101: QERSIIEEGQ IGHFSTDFHG HYEDTFSCYN INKVVKMEEA TSRIVGEKKS KNYKVKKLEG QPSKNLMAER RRRKRLNDRL SMLRSIVPKI SKMDRTSILG
201: DTIDYVKELL DKINRLHEEN EMEDEIKDIK FLGNFKGLKP NEALVRNPPK FDVERRNEDE TSIEICCGTK PGLLLSTVHT MEALGLEVQQ CVVSCFSDFS
301: MRASCSEEVE HRNFLSSEDV KQALFKTAGY GGRCL
Best Arabidopsis Sequence Match ( AT5G65640.1 )
(BLAST)
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.