Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc02g091690.2.1 | Tomato | nucleus | 93.13 | 94.83 |
PGSC0003DMT400026937 | Potato | nucleus | 61.19 | 62.88 |
GSMUA_Achr7P03930_001 | Banana | nucleus | 42.99 | 60.76 |
GSMUA_Achr1P26300_001 | Banana | nucleus | 42.99 | 60.25 |
GSMUA_AchrUn_... | Banana | nucleus | 40.6 | 57.38 |
GSMUA_Achr8P34120_001 | Banana | nucleus | 45.37 | 53.15 |
PGSC0003DMT400016360 | Potato | nucleus | 48.06 | 47.63 |
TraesCS4D01G328700.1 | Wheat | cytosol | 20.6 | 47.26 |
AT5G10570.1 | Thale cress | nucleus | 42.09 | 44.76 |
CDX97027 | Canola | nucleus | 39.7 | 44.63 |
Bra009022.1-P | Field mustard | nucleus | 40.3 | 44.55 |
AT5G65640.1 | Thale cress | nucleus | 46.57 | 44.44 |
CDY69978 | Canola | nucleus | 46.57 | 43.58 |
CDX69821 | Canola | nucleus | 39.4 | 43.56 |
Bra031852.1-P | Field mustard | nucleus | 46.27 | 43.3 |
Bra024404.1-P | Field mustard | nucleus | 46.27 | 43.18 |
CDY08769 | Canola | nucleus | 46.27 | 43.18 |
CDY37835 | Canola | nucleus | 45.97 | 43.02 |
TraesCS4B01G331900.1 | Wheat | nucleus | 35.52 | 39.02 |
Os03t0135700-01 | Rice | nucleus | 40.9 | 38.7 |
EER92904 | Sorghum | nucleus | 42.69 | 38.34 |
Zm00001d027546_P001 | Maize | nucleus | 41.79 | 38.04 |
TraesCS4D01G328900.1 | Wheat | nucleus | 38.81 | 37.36 |
TraesCS4D01G329100.1 | Wheat | nucleus | 38.21 | 36.57 |
TraesCS4D01G328800.1 | Wheat | nucleus | 38.51 | 36.54 |
TraesCS3A01G057900.1 | Wheat | nucleus | 35.52 | 36.39 |
TraesCS5A01G503300.1 | Wheat | nucleus | 38.21 | 36.26 |
TraesCS4D01G329000.2 | Wheat | nucleus | 38.21 | 36.26 |
TraesCSU01G069400.1 | Wheat | nucleus | 37.91 | 36.08 |
TraesCS5A01G503500.1 | Wheat | nucleus | 37.91 | 36.08 |
PGSC0003DMT400005209 | Potato | nucleus | 27.76 | 36.05 |
TraesCS4B01G332000.1 | Wheat | nucleus | 37.31 | 36.02 |
HORVU4Hr1G080890.1 | Barley | nucleus | 37.91 | 35.77 |
TraesCS3D01G058100.1 | Wheat | nucleus | 31.34 | 35.47 |
TraesCS3A01G058000.1 | Wheat | nucleus | 30.15 | 33.67 |
TraesCS3B01G070400.1 | Wheat | nucleus | 29.55 | 32.46 |
TraesCS5A01G503400.1 | Wheat | nucleus | 34.63 | 32.13 |
TraesCSU01G069300.1 | Wheat | nucleus | 33.43 | 31.82 |
PGSC0003DMT400010463 | Potato | nucleus | 15.82 | 21.03 |
PGSC0003DMT400036951 | Potato | nucleus | 31.34 | 19.06 |
PGSC0003DMT400074075 | Potato | nucleus | 29.85 | 18.87 |
PGSC0003DMT400044959 | Potato | nucleus | 12.84 | 18.61 |
PGSC0003DMT400048941 | Potato | nucleus | 15.82 | 16.99 |
PGSC0003DMT400021165 | Potato | nucleus | 20.3 | 15.63 |
Protein Annotations
EntrezGene:102588068 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1D0J1 |
PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400030616 | PGSC:PGSC0003DMG400030616 | EnsemblPlants:PGSC0003DMT400078675 | PFscan:PS50888 | PANTHER:PTHR31945 |
PANTHER:PTHR31945:SF15 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000295DAC2 | RefSeq:XP_006357756.2 | InterPro:bHLH_dom |
SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030616]
Coordinates
chr2:+:42043191..42045006
Molecular Weight (calculated)
38419.3 Da
IEP (calculated)
5.323
GRAVY (calculated)
-0.612
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MELTQQDFLE VVVSPRIESW NNTFANAWNI ESPTFYQQNP EFVPSNSSLL DLIMSPSQSN YFPCPDFQES SYPFLHSFNS TTTAPPQVID SSTYNNNTNI
101: QERSIIEEGQ IGHFSTDFHG HYEDTFSCYN INKVVKMEEA TSRIVGEKKS KNYKVKKLEG QPSKNLMAER RRRKRLNDRL SMLRSIVPKI SKMDRTSILG
201: DTIDYVKELL DKINRLHEEN EMEDEIKDIK FLGNFKGLKP NEALVRNPPK FDVERRNEDE TSIEICCGTK PGLLLSTVHT MEALGLEVQQ CVVSCFSDFS
301: MRASCSEEVE HRNFLSSEDV KQALFKTAGY GGRCL
101: QERSIIEEGQ IGHFSTDFHG HYEDTFSCYN INKVVKMEEA TSRIVGEKKS KNYKVKKLEG QPSKNLMAER RRRKRLNDRL SMLRSIVPKI SKMDRTSILG
201: DTIDYVKELL DKINRLHEEN EMEDEIKDIK FLGNFKGLKP NEALVRNPPK FDVERRNEDE TSIEICCGTK PGLLLSTVHT MEALGLEVQQ CVVSCFSDFS
301: MRASCSEEVE HRNFLSSEDV KQALFKTAGY GGRCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.