Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G069300.1 | Wheat | nucleus | 91.48 | 91.48 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 90.06 | 90.57 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 76.99 | 88.85 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 86.93 | 87.93 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 87.78 | 87.54 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 86.93 | 86.69 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 86.65 | 86.4 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 86.36 | 86.36 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 84.94 | 84.23 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 33.52 | 80.82 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 81.25 | 79.22 |
| Os03t0135700-01 | Rice | nucleus | 69.32 | 68.93 |
| EER92904 | Sorghum | nucleus | 69.03 | 65.15 |
| Zm00001d027546_P001 | Maize | nucleus | 65.06 | 62.23 |
| KRH73107 | Soybean | mitochondrion, nucleus | 27.56 | 59.51 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 38.35 | 56.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.65 | 54.43 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 39.77 | 48.95 |
| KRG99605 | Soybean | cytosol | 19.6 | 43.67 |
| KRH62159 | Soybean | nucleus | 40.62 | 43.33 |
| KRH39520 | Soybean | nucleus | 40.91 | 43.24 |
| KRH74438 | Soybean | nucleus | 40.91 | 43.11 |
| KRH52870 | Soybean | nucleus | 39.49 | 41.99 |
| KRH16156 | Soybean | nucleus | 32.39 | 41.91 |
| KRH45479 | Soybean | nucleus | 38.07 | 41.88 |
| KRH16909 | Soybean | nucleus | 39.77 | 41.67 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 39.49 | 41.62 |
| KRH72519 | Soybean | nucleus | 38.64 | 40.84 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 38.07 | 40.48 |
| PGSC0003DMT400016360 | Potato | nucleus | 37.78 | 39.35 |
| Solyc02g091690.2.1 | Tomato | nucleus | 35.51 | 37.99 |
| PGSC0003DMT400078675 | Potato | nucleus | 36.08 | 37.91 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 34.66 | 37.89 |
| PGSC0003DMT400026937 | Potato | nucleus | 34.66 | 37.42 |
| Solyc12g088130.1.1 | Tomato | nucleus | 35.51 | 37.2 |
| Solyc02g063430.2.1 | Tomato | nucleus | 33.81 | 37.07 |
| CDX97027 | Canola | nucleus | 30.68 | 36.24 |
| AT5G10570.1 | Thale cress | nucleus | 32.39 | 36.19 |
| Bra009022.1-P | Field mustard | nucleus | 30.68 | 35.64 |
| CDX69821 | Canola | nucleus | 30.4 | 35.31 |
| AT5G65640.1 | Thale cress | nucleus | 34.94 | 35.04 |
| Bra024404.1-P | Field mustard | nucleus | 34.94 | 34.26 |
| CDY08769 | Canola | nucleus | 34.94 | 34.26 |
| CDY69978 | Canola | nucleus | 33.24 | 32.68 |
| PGSC0003DMT400005209 | Potato | nucleus | 23.86 | 32.56 |
| Bra031852.1-P | Field mustard | nucleus | 32.95 | 32.4 |
| CDY37835 | Canola | nucleus | 32.95 | 32.4 |
| TraesCSU01G138900.1 | Wheat | nucleus | 13.35 | 18.29 |
| TraesCSU01G138400.2 | Wheat | nucleus | 12.78 | 17.93 |
Protein Annotations
| EnsemblPlants:TraesCSU01G069400.1 | EnsemblPlantsGene:TraesCSU01G069400 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF4 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrUn:-:60347854..60349804
Molecular Weight (calculated)
37983.8 Da
IEP (calculated)
4.631
GRAVY (calculated)
-0.409
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQLDEQSFL DELMSLRREE APVPAPAPWQ AYPASGMMTT TDLLFYGGEG AAEASSGMDL AGPFQQPMAP PPAAPPHRPH EEFNFDCLSE VCNPYRSCTG
101: GGVPGPGVVH AAGQAYALHD AMAEDHPSCG NLHRGGGSSS SPVPFVFGEG GAGETSEEMT RGVFSGGNPR SKLNRGTTSK NLMAERRRRK RLNDRLSMLR
201: SIVPKISKMD RTSILEDTLD YVNELTERIK TLEEEIGATP EELNLLNTTK NFSSGSSEEM PMRNSTKFII EKQGDVETRI DICCATSPGV LISTVSALEV
301: LGLEIEQCVV SCFGDFAMQA SCSQEEGRSR VTSTDEIKHA LFTSAGYGGR CL
101: GGVPGPGVVH AAGQAYALHD AMAEDHPSCG NLHRGGGSSS SPVPFVFGEG GAGETSEEMT RGVFSGGNPR SKLNRGTTSK NLMAERRRRK RLNDRLSMLR
201: SIVPKISKMD RTSILEDTLD YVNELTERIK TLEEEIGATP EELNLLNTTK NFSSGSSEEM PMRNSTKFII EKQGDVETRI DICCATSPGV LISTVSALEV
301: LGLEIEQCVV SCFGDFAMQA SCSQEEGRSR VTSTDEIKHA LFTSAGYGGR CL
001: METELTQLRK QESNNLNGVN GGFMAIDQFV PNDWNFDYLC FNNLLQEDDN IDHPSSSSLM NLISQPPPLL HQPPQPSSPL YDSPPLSSAF DYPFLEDIIH
101: SSYSPPPLIL PASQENTNNY SPLMEESKSF ISIGETNKKR SNKKLEGQPS KNLMAERRRR KRLNDRLSLL RSIVPKITKM DRTSILGDAI DYMKELLDKI
201: NKLQEDEQEL GSNSHLSTLI TNESMVRNSL KFEVDQREVN THIDICCPTK PGLVVSTVST LETLGLEIEQ CVISCFSDFS LQASCFEVGE QRYMVTSEAT
301: KQALIRNAGY GGRCL
101: SSYSPPPLIL PASQENTNNY SPLMEESKSF ISIGETNKKR SNKKLEGQPS KNLMAERRRR KRLNDRLSLL RSIVPKITKM DRTSILGDAI DYMKELLDKI
201: NKLQEDEQEL GSNSHLSTLI TNESMVRNSL KFEVDQREVN THIDICCPTK PGLVVSTVST LETLGLEIEQ CVISCFSDFS LQASCFEVGE QRYMVTSEAT
301: KQALIRNAGY GGRCL
Arabidopsis Description
BHLH61Transcription factor bHLH61 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.