Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g088130.1.1 | Tomato | nucleus | 93.41 | 71.73 |
| PGSC0003DMT400016360 | Potato | nucleus | 51.16 | 39.05 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 35.27 | 38.08 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 33.33 | 36.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.33 | 36.29 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 37.98 | 34.27 |
| PGSC0003DMT400026937 | Potato | nucleus | 36.43 | 28.83 |
| PGSC0003DMT400078675 | Potato | nucleus | 36.05 | 27.76 |
| Os03t0135700-01 | Rice | nucleus | 37.6 | 27.4 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 31.01 | 26.23 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 29.84 | 26.01 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 34.11 | 25.36 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 34.88 | 25.35 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 34.11 | 25.29 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 34.11 | 25.14 |
| EER92904 | Sorghum | nucleus | 36.05 | 24.93 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 33.72 | 24.72 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 33.72 | 24.65 |
| Zm00001d027546_P001 | Maize | nucleus | 34.5 | 24.18 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 32.95 | 24.08 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 32.95 | 24.08 |
| TraesCSU01G069300.1 | Wheat | nucleus | 32.56 | 23.86 |
| TraesCSU01G069400.1 | Wheat | nucleus | 32.56 | 23.86 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 29.84 | 23.55 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 12.4 | 21.92 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 29.84 | 21.33 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 24.03 | 20.33 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 23.26 | 20.0 |
| PGSC0003DMT400044959 | Potato | nucleus | 15.12 | 16.88 |
| PGSC0003DMT400010463 | Potato | nucleus | 15.89 | 16.27 |
| PGSC0003DMT400048941 | Potato | nucleus | 16.28 | 13.46 |
| PGSC0003DMT400074075 | Potato | nucleus | 27.13 | 13.21 |
| PGSC0003DMT400036951 | Potato | nucleus | 27.13 | 12.7 |
| PGSC0003DMT400021165 | Potato | nucleus | 18.22 | 10.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400005209 | EnsemblPlantsGene:PGSC0003DMG400002056 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF15 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400002056 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002954C69 | UniProt:M0ZPM3 | MapMan:15.5.32 | : |
Description
BHLH transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002056]
Coordinates
chr12:-:55922385..55924261
Molecular Weight (calculated)
29568.0 Da
IEP (calculated)
5.209
GRAVY (calculated)
-0.526
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDYYRENEF LLDELFALRS DLWESTCLPM EINSSSSNLY SNNINYDCFG EIPLPSTTTT TTTTSFEDYY NNFPIDQSQN YSLLHSEFYS TQKVDVLSPL
101: ELTNSFNSPF TSQLEDFSSI YFDVGNFGDC KLERTQSTAS SAAIAPANFN IGVCLDKKAK TKKVNGEPSK NLMAERRRRK RLNGRLSMLR SIVPKISKMD
201: RTSILGDTID YTKELLEKIN NLQQEMKLGS NQLSLMSIFK NEKPIEMFVR NSPKRCVI
101: ELTNSFNSPF TSQLEDFSSI YFDVGNFGDC KLERTQSTAS SAAIAPANFN IGVCLDKKAK TKKVNGEPSK NLMAERRRRK RLNGRLSMLR SIVPKISKMD
201: RTSILGDTID YTKELLEKIN NLQQEMKLGS NQLSLMSIFK NEKPIEMFVR NSPKRCVI
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKIVE TRILELIYAA RQNRDCYYLL
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKIVE TRILELIYAA RQNRDCYYLL
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.