Factsheet for Bra024115.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30182	Canola	nucleus	100.0	100.0
Bra011152.1-P	Field mustard	nucleus	79.92	78.63
AT4G29930.3	Thale cress	nucleus	78.28	72.62
Bra002756.1-P	Field mustard	nucleus	56.15	55.69
Bra006831.1-P	Field mustard	nucleus	54.92	54.47
Bra020462.1-P	Field mustard	nucleus	54.92	54.47
VIT_11s0052g00100.t01	Wine grape	nucleus	51.64	51.64
Solyc07g018010.2.1	Tomato	nucleus	46.31	44.66
PGSC0003DMT400010463	Potato	nucleus	45.9	44.44
PGSC0003DMT400044959	Potato	nucleus	39.75	41.99
Solyc05g014590.2.1	Tomato	nucleus	38.93	41.13
GSMUA_Achr7P16000_001	Banana	nucleus	42.62	40.0
GSMUA_Achr6P30900_001	Banana	nucleus	33.2	38.57
TraesCS2D01G270300.1	Wheat	nucleus	38.52	33.81
TraesCS2A01G271700.1	Wheat	nucleus	38.11	33.45
TraesCS2B01G289900.1	Wheat	nucleus	37.7	33.09
TraesCS2D01G270000.2	Wheat	nucleus	35.66	32.46
Zm00001d025141_P003	Maize	nucleus	34.43	32.06
Zm00001d024522_P001	Maize	nucleus	33.61	31.78
TraesCS2B01G289700.2	Wheat	nucleus	35.66	31.75
TraesCS3B01G018400.1	Wheat	nucleus	33.2	30.57
TraesCS5A01G533900.1	Wheat	nucleus	29.51	30.51
HORVU2Hr1G066100.1	Barley	cytosol, nucleus	38.11	30.49
TraesCSU01G138400.2	Wheat	nucleus	30.74	29.88
EES14602	Sorghum	nucleus	34.84	29.51
TraesCSU01G138900.1	Wheat	nucleus	29.51	28.02
HORVU4Hr1G087610.1	Barley	nucleus	28.69	27.89
Os04t0301500-01	Rice	nucleus	35.25	27.74
TraesCS4B01G364800.1	Wheat	nucleus	29.1	27.73
TraesCS5A01G533200.1	Wheat	nucleus	29.1	27.73
Zm00001d004095_P001	Maize	nucleus	34.84	27.69
HORVU4Hr1G087590.1	Barley	nucleus	28.69	27.24
TraesCS3A01G028200.3	Wheat	nucleus	29.92	26.94
GSMUA_Achr4P12700_001	Banana	nucleus	32.38	26.78
HORVU2Hr1G066000.7	Barley	nucleus	29.1	25.91
HORVU2Hr1G066090.2	Barley	cytosol	15.98	25.49
EES05013	Sorghum	nucleus	29.1	25.18
Os04t0300600-00	Rice	cytosol	30.33	25.08
TraesCS3A01G442600.1	Wheat	nucleus	29.51	24.66
HORVU3Hr1G005500.3	Barley	cytosol, nucleus	31.97	24.07
TraesCS3D01G435200.1	Wheat	nucleus	30.33	23.42
TraesCS3D01G017700.1	Wheat	nucleus	32.38	21.24
Bra034392.1-P	Field mustard	nucleus	25.41	19.62
Bra011972.1-P	Field mustard	nucleus	24.59	18.99
Bra000495.1-P	Field mustard	nucleus	23.77	18.83
Bra009022.1-P	Field mustard	nucleus	22.54	18.15
Bra031852.1-P	Field mustard	nucleus	25.0	17.04
Bra024404.1-P	Field mustard	nucleus	24.59	16.71
Bra031723.1-P	Field mustard	cytosol	19.67	12.44
Bra019914.1-P	Field mustard	cytosol	20.49	11.99
Bra019794.1-P	Field mustard	nucleus	20.49	11.76
Bra032947.1-P	Field mustard	nucleus	21.31	11.76
Bra034246.1-P	Field mustard	nucleus	20.08	11.72
Bra016749.1-P	Field mustard	nucleus	20.49	11.55
Bra025226.1-P	Field mustard	nucleus	22.13	10.87
Bra002004.1-P	Field mustard	nucleus	23.77	10.23
Bra013041.1-P	Field mustard	nucleus	22.95	9.86

Protein Annotations

EnsemblPlants:Bra024115.1	EnsemblPlants:Bra024115.1-P	EnsemblPlantsGene:Bra024115	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF26	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002540D46	UniProt:M4E5R1	MapMan:15.5.32	:

Description

AT4G29930 (E=1e-074) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:+:27516997..27518497

Molecular Weight (calculated)

28097.1 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.549

Length

244 amino acids

Sequence
(BLAST)

001: MEDLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI TKLDKASIVK DSIDYMQKLI
101: DQERRLEAEI RELESRSVLL ENPIKDYDCI NNFLENQQQD LLDNNVTRSK KSRQMDYNTS GSSVAGLHNQ SLIEVLEMKV TWMGERTVVV CITCSKRRET
201: MLQLCKVLES LNLNIVTTNF SSFSSRLSTT LFLQHKCSET YITV

Best Arabidopsis Sequence Match ( AT4G29930.1 )
(BLAST)

001: MEDLDHEYKN YWETTMFFQN QELEFDSWPM EEAFSGSGES SSPDGAATSP ASSKNVVSER NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI
101: DQEKTLEAEI RELESRSTLL ENPVRDYDCN FAETHLQDFS DNNDMRSKKF KQMDYSTRVQ HYPIEVLEMK VTWMGEKTVV VCITCSKKRE TMVQLCKVLE
201: SLNLNILTTN FSSFTSRLST TLFLQADEEE SSAVEAKIQM AIAAYNDPNC LINF

Arabidopsis Description

BHLH27Transcription factor bHLH27 [Source:UniProtKB/Swiss-Prot;Acc:Q700E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.