Factsheet for Bra019914.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93399	Canola	nucleus	94.96	96.59
Bra031723.1-P	Field mustard	cytosol	73.38	79.27
AT1G10610.1	Thale cress	nucleus	69.54	65.76
Solyc05g005300.2.1	Tomato	nucleus	32.61	28.22
KRH45665	Soybean	nucleus	31.89	26.81
Bra013041.1-P	Field mustard	nucleus	31.89	23.42
VIT_01s0127g00650.t01	Wine grape	nucleus	9.59	22.73
Bra002756.1-P	Field mustard	nucleus	13.19	22.36
Bra002004.1-P	Field mustard	nucleus	30.22	22.22
Bra006831.1-P	Field mustard	nucleus	12.71	21.54
Bra020462.1-P	Field mustard	nucleus	12.23	20.73
Bra024115.1-P	Field mustard	nucleus	11.99	20.49
Bra011152.1-P	Field mustard	nucleus	11.99	20.16
Bra000495.1-P	Field mustard	nucleus	13.43	18.18
Bra009022.1-P	Field mustard	nucleus	12.71	17.49
Bra011972.1-P	Field mustard	nucleus	12.71	16.77
Bra034392.1-P	Field mustard	nucleus	12.47	16.46
Bra031852.1-P	Field mustard	nucleus	12.95	15.08
Bra024404.1-P	Field mustard	nucleus	12.95	15.04
Bra032947.1-P	Field mustard	nucleus	13.43	12.67
Bra025226.1-P	Field mustard	nucleus	14.87	12.47
Bra016749.1-P	Field mustard	nucleus	12.95	12.47
Bra019794.1-P	Field mustard	nucleus	12.23	12.0
Bra034246.1-P	Field mustard	nucleus	11.99	11.96

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra019914	EnsemblPlants:Bra019914.1	EnsemblPlants:Bra019914.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4DTS1	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF14	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253EA8C	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT1G10610 (E=7e-081) | DNA binding / transcription factor

Coordinates

chrA06:+:3726838..3728922

Molecular Weight (calculated)

48281.1 Da

IEP (calculated)

5.880

GRAVY (calculated)

-0.445

Length

417 amino acids

Sequence
(BLAST)

001: MMMRGGERVK EFLRPFVDSR EWDFCVIWKL GDDPSRYLTL ALWVFIEWVG CCCSGSYIDK NIKHEHVEEE ETQKMSSICR DEDNKHHIRT LACEALSRFP
101: LFMPLYPGIH GEVVMSKSPK WLVNSGPGSK QDIFSTRVLV PVRDGLVELF SFIMKPVDES LVDLIISHCN TFFEPYPEQT LPFRIISKEE ESMLMHKEED
201: VVMQNTMDDK KVAKENFKSK NLHSERKRRE RINQRIYALR AVVPNVTKVL PENSFQMNKN GTLSDAVDYI NQLLVEKQKL EDELRGFNEI ESRRIAAEEE
301: SAIANPHTEK VASRLNKIVN NEVSLEVYET GERGFLIRVA QEHNKQDGFK RLIEAVDSCG LEIIDVNFTR LDLRVMTVLN VKASKDGTTP ENLRDLLLKM
401: MMRTSENPNV ESLRQCT

Best Arabidopsis Sequence Match ( AT1G10610.1 )
(BLAST)

001: MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS EEGGTGRKKK ASFCRDDHNK HRIRTLACEA LSRFPLFMPL
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I

Arabidopsis Description

BHLH90Transcription factor bHLH90 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.