Factsheet for AT1G10610.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34878	Canola	cytosol	64.85	74.48
Bra031723.1-P	Field mustard	cytosol	64.63	73.83
CDY54227	Canola	nucleus	63.27	73.42
CDX93399	Canola	nucleus	65.53	70.49
CDY37964	Canola	nucleus	64.63	70.2
Bra019914.1-P	Field mustard	cytosol	65.76	69.54
Solyc05g005300.2.1	Tomato	nucleus	34.47	31.54
KRH45665	Soybean	nucleus	34.24	30.44
VIT_01s0127g00650.t01	Wine grape	nucleus	9.75	24.43
AT2G16910.1	Thale cress	nucleus	29.93	23.12
AT5G57150.4	Thale cress	nucleus	12.47	20.83
AT4G29930.3	Thale cress	nucleus	10.66	17.87
AT2G28160.1	Thale cress	nucleus	12.7	17.61
AT5G10570.1	Thale cress	nucleus	12.47	17.46
AT5G65640.1	Thale cress	nucleus	13.83	17.38
AT3G26744.1	Thale cress	nucleus	14.97	13.36
AT1G12860.1	Thale cress	nucleus	12.47	12.22

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:837604	UniProt:A0A178WLS1	ProteinID:AAD39586.1	ProteinID:AAF17654.1
ProteinID:AAF17655.1	ProteinID:AEE28609.1	EMBL:AF488620	EMBL:AK229375	ArrayExpress:AT1G10610	EnsemblPlantsGene:AT1G10610
RefSeq:AT1G10610	TAIR:AT1G10610	RefSeq:AT1G10610-TAIR-G	EnsemblPlants:AT1G10610.1	TAIR:AT1G10610.1	Unigene:At.42172
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	RefSeq:NP_172531.2
ProteinID:OAP19237.1	PFAM:PF00010	PFAM:PF14215	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50888	PANTHER:PTHR31945	PANTHER:PTHR31945:SF14
UniProt:Q0WNR2	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000DB53F5	InterPro:bHLH_dom	SEG:seg

Description

BHLH90Transcription factor bHLH90 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNR2]

Coordinates

chr1:+:3506186..3509006

Molecular Weight (calculated)

50236.9 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.358

Length

441 amino acids

Sequence
(BLAST)

001: MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS EEGGTGRKKK ASFCRDDHNK HRIRTLACEA LSRFPLFMPL
101: YPGIHGEVVM SKSPKWLVNS GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP RAEESMSSGV NLSVEGGGSS
201: SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS
301: DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII
401: DVNFTRLDLT VMTVLNVKAN KDGIACGILR DLLLKMMITS I

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.