Factsheet for Bra014653.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76032	Canola	cytosol	100.0	100.0
Bra014657.1-P	Field mustard	nucleus	66.07	58.96
Bra014659.1-P	Field mustard	nucleus	58.48	51.17
Bra014658.1-P	Field mustard	nucleus	54.46	49.19
Bra014654.1-P	Field mustard	nucleus	54.91	49.0
AT3G56980.1	Thale cress	nucleus	55.36	48.06
Bra014971.1-P	Field mustard	cytosol, nucleus, plastid	50.89	46.34
Bra003261.1-P	Field mustard	mitochondrion	37.5	45.65
Bra007290.1-P	Field mustard	nucleus	50.45	45.38
Bra003260.1-P	Field mustard	nucleus	50.0	44.98
Bra007289.1-P	Field mustard	nucleus	49.55	44.58
Bra041013.1-P	Field mustard	nucleus	47.32	42.23
Bra014970.1-P	Field mustard	nucleus	45.98	41.53
Bra004609.1-P	Field mustard	nucleus	43.3	39.92
Bra016946.1-P	Field mustard	nucleus	40.62	38.24
VIT_13s0047g00450.t01	Wine grape	nucleus	31.7	31.56
KRG95137	Soybean	cytosol, nucleus, plastid	16.07	30.77
VIT_08s0007g05300.t01	Wine grape	nucleus	33.48	30.61
PGSC0003DMT400076759	Potato	nucleus	23.66	29.44
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	30.8	28.63
Solyc10g079680.1.1	Tomato	nucleus	24.11	27.98
KRH66814	Soybean	nucleus	29.91	27.8
PGSC0003DMT400076775	Potato	cytosol	12.5	26.67
KRH66812	Soybean	cytosol, nucleus, plastid	28.57	26.56
GSMUA_Achr8P22120_001	Banana	nucleus	27.23	25.42
Zm00001d042062_P001	Maize	nucleus	25.0	25.23
HORVU2Hr1G114070.1	Barley	nucleus	28.12	24.9
TraesCS2B01G543800.1	Wheat	nucleus	27.68	24.8
Solyc10g079650.1.1	Tomato	nucleus	27.68	24.8
TraesCS2B01G543700.1	Wheat	nucleus	26.79	24.59
TraesCS2A01G515300.1	Wheat	nucleus	27.23	24.11
TraesCS7B01G321400.1	Wheat	nucleus	26.79	24.1
TraesCS3D01G495400.1	Wheat	nucleus	25.45	23.95
TraesCS3B01G549700.1	Wheat	nucleus	22.32	23.92
GSMUA_AchrUn_...	Banana	nucleus	26.34	23.89
TraesCS2D01G517000.1	Wheat	nucleus	26.79	23.72
TraesCS7A01G421000.1	Wheat	nucleus	26.79	23.62
TraesCS3B01G549800.1	Wheat	nucleus	25.0	23.53
Zm00001d011847_P001	Maize	nucleus	23.21	22.71
TraesCS3A01G489500.1	Wheat	nucleus	24.11	22.69
HORVU3Hr1G108670.2	Barley	nucleus	24.11	22.5
TraesCS3A01G489700.1	Wheat	nucleus	24.55	22.27
TraesCS3D01G495700.1	Wheat	nucleus	24.55	22.27
TraesCS3B01G550200.2	Wheat	nucleus	24.55	22.27
Os01t0952800-01	Rice	nucleus	24.55	22.27
TraesCS3D01G495300.1	Wheat	nucleus	23.21	22.22
TraesCS3A01G489400.1	Wheat	nucleus	22.77	21.98
HORVU3Hr1G108660.1	Barley	nucleus	22.77	21.98
HORVU3Hr1G108680.1	Barley	nucleus	23.66	21.54
KXG34133	Sorghum	nucleus	22.77	20.9
TraesCS3D01G495600.1	Wheat	nucleus	21.88	20.0
TraesCS3A01G489600.1	Wheat	nucleus	21.43	19.59
TraesCS3B01G550000.1	Wheat	nucleus	20.98	19.18
Solyc10g079660.1.1	Tomato	nucleus	29.91	9.61

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014653	EnsemblPlants:Bra014653.1	EnsemblPlants:Bra014653.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DDT4	InterPro:MASH1/Ascl1a-like	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SUPFAM:SSF47459	SignalP:SignalP-noTM	UniParc:UPI00025445A1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

AT3G56970 (E=2e-043) BHLH038, ORG2 | BHLH038; DNA binding / transcription factor

Coordinates

chrA04:+:2035232..2036737

Molecular Weight (calculated)

25292.1 Da

IEP (calculated)

7.659

GRAVY (calculated)

-0.375

Length

224 amino acids

Sequence
(BLAST)

001: MYSLLFILSS TMAPVESTRI TTVDRRAREN LDDFTFLDFP ALETYGMEHQ EIQEILGVSV PSEGNGVVTK KLNHNASERD RHKKIKSLFS SLRSCLPASD
101: PVKEAKYSSD GFSELEYIPE LQEEVKKLIK KKELLVRVSG QRAIEHYVEP QPKTDVARYV STISATKLGD NEVMVQISSS KIHNFSISNV LSGLEEDGFC
201: SYGYFIFKVS RRKTLLHFAS SNGK

Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)

001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN

Arabidopsis Description

ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.