Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66812 | Soybean | cytosol, nucleus, plastid | 89.63 | 89.63 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 31.54 | 64.96 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 45.64 | 48.89 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 48.96 | 48.16 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 44.4 | 44.4 |
| AT3G56980.1 | Thale cress | nucleus | 43.98 | 41.09 |
| Bra014658.1-P | Field mustard | nucleus | 41.08 | 39.92 |
| CDY69684 | Canola | nucleus | 41.49 | 39.84 |
| CDY68089 | Canola | nucleus | 41.49 | 39.84 |
| Bra003261.1-P | Field mustard | mitochondrion | 30.29 | 39.67 |
| CDX76026 | Canola | nucleus | 40.66 | 39.52 |
| Bra014657.1-P | Field mustard | nucleus | 41.08 | 39.44 |
| CDY23861 | Canola | cytosol, plastid | 22.82 | 39.29 |
| CDY47395 | Canola | nucleus | 35.68 | 38.91 |
| AT2G41240.1 | Thale cress | nucleus | 39.0 | 38.84 |
| CDY47394 | Canola | nucleus | 41.08 | 38.82 |
| Bra014659.1-P | Field mustard | nucleus | 41.08 | 38.67 |
| CDY47392 | Canola | nucleus | 41.08 | 38.67 |
| CDX76025 | Canola | nucleus | 41.08 | 38.67 |
| Solyc10g079650.1.1 | Tomato | nucleus | 39.83 | 38.4 |
| AT3G56970.1 | Thale cress | nucleus | 40.25 | 38.34 |
| Zm00001d042062_P001 | Maize | nucleus | 35.27 | 38.29 |
| PGSC0003DMT400076759 | Potato | nucleus | 28.22 | 37.78 |
| CDY72354 | Canola | nucleus | 37.76 | 37.45 |
| CDX97997 | Canola | nucleus | 37.76 | 37.45 |
| Solyc10g079680.1.1 | Tomato | nucleus | 29.88 | 37.31 |
| Bra014654.1-P | Field mustard | nucleus | 38.59 | 37.05 |
| CDX76031 | Canola | nucleus | 38.59 | 37.05 |
| Bra004609.1-P | Field mustard | nucleus | 37.34 | 37.04 |
| CDY06938 | Canola | nucleus | 36.51 | 36.97 |
| CDY14758 | Canola | nucleus | 36.51 | 36.97 |
| Bra016946.1-P | Field mustard | nucleus | 36.51 | 36.97 |
| CDY06148 | Canola | nucleus | 38.17 | 36.95 |
| Bra007290.1-P | Field mustard | nucleus | 37.76 | 36.55 |
| Bra003260.1-P | Field mustard | nucleus | 37.76 | 36.55 |
| Zm00001d011847_P001 | Maize | nucleus | 34.44 | 36.24 |
| CDX67670 | Canola | nucleus | 37.34 | 36.14 |
| PGSC0003DMT400076775 | Potato | cytosol | 15.35 | 35.24 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 36.51 | 35.2 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 36.93 | 35.18 |
| CDY71118 | Canola | nucleus | 36.1 | 35.08 |
| Bra014970.1-P | Field mustard | nucleus | 36.1 | 35.08 |
| CDX77490 | Canola | nucleus | 36.1 | 35.08 |
| CDX67671 | Canola | nucleus | 36.1 | 34.94 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 34.44 | 34.87 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 35.27 | 34.84 |
| CDX72086 | Canola | nucleus | 34.02 | 34.75 |
| CDX85121 | Canola | nucleus | 35.27 | 34.55 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 34.02 | 34.45 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 36.1 | 34.39 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 34.02 | 34.17 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 34.85 | 34.15 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 34.85 | 34.15 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 33.61 | 34.03 |
| KXG34133 | Sorghum | nucleus | 34.44 | 34.02 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 34.85 | 34.01 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 34.85 | 34.01 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 35.68 | 33.99 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 33.61 | 33.75 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 34.44 | 33.6 |
| CDY71388 | Canola | cytosol | 34.85 | 33.47 |
| CDY06149 | Canola | nucleus | 34.44 | 33.33 |
| Bra007289.1-P | Field mustard | nucleus | 34.44 | 33.33 |
| Os01t0952800-01 | Rice | nucleus | 34.02 | 33.2 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 33.61 | 32.93 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 28.22 | 32.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.2 | 32.39 |
| CDX72085 | Canola | nucleus | 33.2 | 31.87 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 32.37 | 31.84 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 32.37 | 31.84 |
| CDX76027 | Canola | nucleus | 30.29 | 31.74 |
| Bra041013.1-P | Field mustard | nucleus | 32.37 | 31.08 |
| CDY06147 | Canola | nucleus | 32.37 | 31.08 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 29.88 | 31.03 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 31.54 | 31.02 |
| CDY47396 | Canola | mitochondrion | 37.34 | 30.51 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 29.46 | 30.34 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 29.05 | 30.17 |
| Bra014653.1-P | Field mustard | cytosol | 27.8 | 29.91 |
| CDX76032 | Canola | cytosol | 27.8 | 29.91 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 30.71 | 29.72 |
| AT5G04150.1 | Thale cress | nucleus | 31.95 | 29.62 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 31.12 | 29.53 |
| CDX80905 | Canola | nucleus | 31.12 | 19.28 |
| CDX76023 | Canola | cytosol | 2.07 | 17.86 |
| Solyc10g079660.1.1 | Tomato | nucleus | 43.98 | 15.21 |
Protein Annotations
| EntrezGene:100790212 | MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | EMBL:ACUP02002012 |
| ncoils:Coil | EnsemblPlantsGene:GLYMA_03G130600 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | GO:GO:0090575 | InterPro:HLH_DNA-bd_sf | UniProt:I1JN79 | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlants:KRH66814 | ProteinID:KRH66814 | ProteinID:KRH66814.1 | EMBL:KT031101 | InterPro:MASH1/Ascl1a-like |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002339EAB | InterPro:bHLH_dom | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:34535707..34537828
Molecular Weight (calculated)
27534.7 Da
IEP (calculated)
7.661
GRAVY (calculated)
-0.503
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MVALFSPPVF STKGWFLEEE PLSYDVSSDY SFPYQFFAPQ TQIELEIERS SAPSPEDPAM VKKLSHNASE RDRRKKVNDL VSSLRSLLPG PDQTKKMSIP
101: ATVSRVLKYI PELQHQVQAL TKKKEELLCR ISKNLKGDSV NKESQRRISH HNSDFAVSTS RLNDCEAVVH ISSYEAHKAP LSDILQCLEN NGLYLLNASS
201: SETFGGRVFY NLHFQVEKTH RLESEILTEK LLSIYEKQRI F
101: ATVSRVLKYI PELQHQVQAL TKKKEELLCR ISKNLKGDSV NKESQRRISH HNSDFAVSTS RLNDCEAVVH ISSYEAHKAP LSDILQCLEN NGLYLLNASS
201: SETFGGRVFY NLHFQVEKTH RLESEILTEK LLSIYEKQRI F
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.