CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76023	Canola	cytosol	8.7	71.43
CDY69684	Canola	nucleus	70.43	64.54
CDY68089	Canola	nucleus	69.13	63.35
CDX76031	Canola	nucleus	65.22	59.76
CDY47394	Canola	nucleus	64.35	58.04
CDY47392	Canola	nucleus	64.35	57.81
CDX76025	Canola	nucleus	64.35	57.81
CDX76026	Canola	nucleus	62.17	57.66
CDY23861	Canola	cytosol, plastid	34.78	57.14
AT3G56980.1	Thale cress	nucleus	63.48	56.59
CDX72086	Canola	nucleus	56.52	55.08
CDY47395	Canola	nucleus	52.61	54.75
CDY47396	Canola	mitochondrion	70.0	54.58
CDY06148	Canola	nucleus	58.7	54.22
CDX67671	Canola	nucleus	57.83	53.41
CDX67670	Canola	nucleus	57.83	53.41
CDY06149	Canola	nucleus	56.52	52.21
CDY71118	Canola	nucleus	56.09	52.02
CDY71388	Canola	cytosol	56.52	51.79
CDX77489	Canola	cytosol, nucleus, plastid	54.78	51.22
CDX77490	Canola	nucleus	55.22	51.21
CDX85121	Canola	nucleus	54.35	50.81
CDX72085	Canola	nucleus	54.35	49.8
CDY06147	Canola	nucleus	53.48	49.0
CDY06938	Canola	nucleus	46.09	44.54
CDY72354	Canola	nucleus	46.96	44.44
CDX97997	Canola	nucleus	46.96	44.44
CDX76032	Canola	cytosol	43.04	44.2
CDY14758	Canola	nucleus	45.65	44.12
VIT_08s0007g05300.t01	Wine grape	nucleus	35.65	33.47
VIT_13s0047g00450.t01	Wine grape	nucleus	32.17	32.89
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	31.74	30.29
KRH66814	Soybean	nucleus	31.74	30.29
KRH66812	Soybean	cytosol, nucleus, plastid	30.43	29.05
PGSC0003DMT400076759	Potato	nucleus	22.61	28.89
Solyc10g079680.1.1	Tomato	nucleus	23.48	27.98
GSMUA_Achr8P22120_001	Banana	nucleus	27.83	26.67
Solyc10g079650.1.1	Tomato	nucleus	28.7	26.4
Zm00001d042062_P001	Maize	nucleus	25.22	26.13
GSMUA_AchrUn_...	Banana	nucleus	27.83	25.91
TraesCS3B01G549700.1	Wheat	nucleus	23.48	25.84
Zm00001d011847_P001	Maize	nucleus	25.65	25.76
KRG95137	Soybean	cytosol, nucleus, plastid	13.04	25.64
TraesCS2B01G543700.1	Wheat	nucleus	26.52	25.0
TraesCS3D01G495700.1	Wheat	nucleus	26.52	24.7
HORVU3Hr1G108660.1	Barley	nucleus	24.78	24.57
HORVU3Hr1G108680.1	Barley	nucleus	26.09	24.39
TraesCS3A01G489500.1	Wheat	nucleus	25.22	24.37
TraesCS3D01G495400.1	Wheat	nucleus	25.22	24.37
TraesCS3B01G550200.2	Wheat	nucleus	26.09	24.29
HORVU3Hr1G108670.2	Barley	nucleus	25.22	24.17
TraesCS2A01G515300.1	Wheat	nucleus	26.52	24.11
TraesCS3A01G489600.1	Wheat	nucleus	25.65	24.08
TraesCS3D01G495600.1	Wheat	nucleus	25.65	24.08
TraesCS2B01G543800.1	Wheat	nucleus	26.09	24.0
TraesCS3A01G489700.1	Wheat	nucleus	25.65	23.89
KXG34133	Sorghum	nucleus	25.22	23.77
HORVU2Hr1G114070.1	Barley	nucleus	26.09	23.72
TraesCS3A01G489400.1	Wheat	nucleus	23.91	23.71
TraesCS3B01G550000.1	Wheat	nucleus	25.22	23.67
TraesCS3B01G549800.1	Wheat	nucleus	24.35	23.53
TraesCS2D01G517000.1	Wheat	nucleus	25.65	23.32
Os01t0952800-01	Rice	nucleus	24.78	23.08
TraesCS3D01G495300.1	Wheat	nucleus	23.48	23.08
TraesCS7B01G321400.1	Wheat	nucleus	22.61	20.88
TraesCS7A01G421000.1	Wheat	nucleus	23.04	20.87
CDX80905	Canola	nucleus	26.96	15.94
PGSC0003DMT400076775	Potato	cytosol	6.52	14.29
Solyc10g079660.1.1	Tomato	nucleus	31.74	10.47

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078CH25	EnsemblPlants:CDX76027	ProteinID:CDX76027	ProteinID:CDX76027.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00126251001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MASH1/Ascl1a-like
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0004EE2111	InterPro:bHLH_dom	:	:	:	:

Description

BnaA04g02910D

Coordinates

chrLK031806:-:271640..278853

Molecular Weight (calculated)

26403.4 Da

IEP (calculated)

7.960

GRAVY (calculated)

-0.563

Length

230 amino acids

Sequence
(BLAST)

001: MQYVSEAYER DDGNKIWFGS VFTPAVWVLD RKERDKTPEL AKDIQSLQCS QTLGGLRQES TRKINSLFSS LRSCLPASDQ SKKLSIPQTV SRSLKYIPEL
101: QEQVKKLIQK KEELLVRVSG QRDIEHYVEP HPKAVARYVS TISVTKLGDN EVMVQISSSK NHNFSISNVL SGLEEDGFVL VDVSSSRSHG ERLFYTLHLQ
201: MGNKDDYKLT CEELRQRMLY LYEECGNSFR

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.