Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68089 | Canola | nucleus | 67.12 | 78.88 |
| CDY69684 | Canola | nucleus | 67.12 | 78.88 |
| CDX76023 | Canola | cytosol | 7.12 | 75.0 |
| CDX76027 | Canola | nucleus | 54.58 | 70.0 |
| CDY47394 | Canola | nucleus | 58.98 | 68.24 |
| CDY47392 | Canola | nucleus | 58.98 | 67.97 |
| CDX76025 | Canola | nucleus | 58.98 | 67.97 |
| CDX76026 | Canola | nucleus | 56.95 | 67.74 |
| CDX76031 | Canola | nucleus | 57.29 | 67.33 |
| AT3G56980.1 | Thale cress | nucleus | 57.63 | 65.89 |
| CDY47395 | Canola | nucleus | 48.47 | 64.71 |
| CDX72086 | Canola | nucleus | 50.85 | 63.56 |
| CDX67670 | Canola | nucleus | 53.22 | 63.05 |
| CDX67671 | Canola | nucleus | 52.88 | 62.65 |
| CDY06148 | Canola | nucleus | 52.2 | 61.85 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 51.53 | 61.79 |
| CDX85121 | Canola | nucleus | 51.19 | 61.38 |
| CDY71388 | Canola | cytosol | 51.86 | 60.96 |
| CDY06149 | Canola | nucleus | 51.19 | 60.64 |
| CDY71118 | Canola | nucleus | 50.85 | 60.48 |
| CDX72085 | Canola | nucleus | 51.19 | 60.16 |
| CDY06147 | Canola | nucleus | 50.17 | 58.96 |
| CDX77490 | Canola | nucleus | 49.49 | 58.87 |
| CDX76032 | Canola | cytosol | 43.73 | 57.59 |
| CDY23861 | Canola | cytosol, plastid | 27.12 | 57.14 |
| CDY06938 | Canola | nucleus | 42.37 | 52.52 |
| CDX97997 | Canola | nucleus | 43.05 | 52.26 |
| CDY72354 | Canola | nucleus | 43.05 | 52.26 |
| CDY14758 | Canola | nucleus | 42.03 | 52.1 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 30.51 | 40.0 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 33.22 | 40.0 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 14.92 | 37.61 |
| KRH66814 | Soybean | nucleus | 30.51 | 37.34 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 30.17 | 36.93 |
| PGSC0003DMT400076759 | Potato | nucleus | 22.03 | 36.11 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 29.49 | 36.1 |
| Solyc10g079680.1.1 | Tomato | nucleus | 22.71 | 34.72 |
| Zm00001d042062_P001 | Maize | nucleus | 24.07 | 31.98 |
| Zm00001d011847_P001 | Maize | nucleus | 24.75 | 31.88 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 22.03 | 31.1 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 24.75 | 30.42 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 25.08 | 30.33 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 25.08 | 30.08 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 25.76 | 30.04 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 25.08 | 29.96 |
| KXG34133 | Sorghum | nucleus | 24.75 | 29.92 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 25.42 | 29.64 |
| Solyc10g079650.1.1 | Tomato | nucleus | 25.08 | 29.6 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 24.75 | 29.55 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 24.75 | 29.55 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 23.73 | 29.41 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 24.41 | 29.39 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 24.41 | 29.39 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 24.75 | 29.2 |
| Os01t0952800-01 | Rice | nucleus | 24.41 | 29.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.41 | 29.15 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 23.39 | 28.99 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 24.75 | 28.85 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 23.39 | 28.75 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 23.73 | 28.57 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 23.05 | 28.57 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 22.37 | 28.45 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 22.37 | 28.45 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 21.69 | 27.35 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 22.71 | 26.91 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 23.05 | 26.77 |
| PGSC0003DMT400076775 | Potato | cytosol | 9.15 | 25.71 |
| CDX80905 | Canola | nucleus | 28.47 | 21.59 |
| Solyc10g079660.1.1 | Tomato | nucleus | 30.17 | 12.77 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | GO:A0A078IC35 | UniProt:A0A078IC35 |
| EnsemblPlants:CDY47396 | ProteinID:CDY47396 | ProteinID:CDY47396.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00087298001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 |
| TMHMM:TMhelix | UniParc:UPI0004EF2FCF | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BnaC04g24670DBnaC04g24670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC35]
Coordinates
chrLK032713:-:137643..144748
Molecular Weight (calculated)
33492.6 Da
IEP (calculated)
9.357
GRAVY (calculated)
-0.147
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFLKKVIWG TCSRSQSCTT VPGQERFLRL VFVFFFFFFS SALCFCSNIV APLLLTVPLL SLLSLVYFVP IIPYGLTIAE NKDANTNRHG VEHHQEIQEM
101: LGVSVQSEGN GVVTKKLNHN ASERVRRKKI NSLFSSLRSC LPASDQTKLS IPQTVSRSLK YIPELQEQVK KLIQKKDELL VRVSGQKAIE HYVEPQPKAV
201: ARYVSTISAT KLGDNELMVQ ISSSRNHNFS ISNVLSGLEE DGFVLVDVSS SRSQGERLFY TLHLQMGNKH NYKLTCEELS QRMLYLYEEC GNSFR
101: LGVSVQSEGN GVVTKKLNHN ASERVRRKKI NSLFSSLRSC LPASDQTKLS IPQTVSRSLK YIPELQEQVK KLIQKKDELL VRVSGQKAIE HYVEPQPKAV
201: ARYVSTISAT KLGDNELMVQ ISSSRNHNFS ISNVLSGLEE DGFVLVDVSS SRSQGERLFY TLHLQMGNKH NYKLTCEELS QRMLYLYEEC GNSFR
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.