Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g051550.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56970.1 | Solyc06g051550.2.1 | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Solyc06g051550.2.1 | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076775 | Potato | cytosol | 36.8 | 87.62 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 42.8 | 47.56 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 46.0 | 46.94 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 21.6 | 46.15 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 41.6 | 43.15 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 39.2 | 40.66 |
| Solyc10g079680.1.1 | Tomato | nucleus | 31.2 | 40.41 |
| KRH66814 | Soybean | nucleus | 38.4 | 39.83 |
| Zm00001d042062_P001 | Maize | nucleus | 30.4 | 34.23 |
| AT3G56970.1 | Thale cress | nucleus | 34.4 | 33.99 |
| Bra014658.1-P | Field mustard | nucleus | 33.6 | 33.87 |
| Bra003261.1-P | Field mustard | mitochondrion | 24.8 | 33.7 |
| CDY23861 | Canola | cytosol, plastid | 18.8 | 33.57 |
| Bra014657.1-P | Field mustard | nucleus | 33.2 | 33.07 |
| CDX76026 | Canola | nucleus | 32.8 | 33.06 |
| Zm00001d011847_P001 | Maize | nucleus | 30.0 | 32.75 |
| AT2G41240.1 | Thale cress | nucleus | 31.6 | 32.64 |
| Bra004609.1-P | Field mustard | nucleus | 31.6 | 32.51 |
| CDY72354 | Canola | nucleus | 31.6 | 32.51 |
| CDX97997 | Canola | nucleus | 31.6 | 32.51 |
| Bra014654.1-P | Field mustard | nucleus | 32.4 | 32.27 |
| CDX76031 | Canola | nucleus | 32.4 | 32.27 |
| CDY47394 | Canola | nucleus | 32.8 | 32.16 |
| CDY47395 | Canola | nucleus | 28.4 | 32.13 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 26.8 | 32.06 |
| CDX76025 | Canola | nucleus | 32.8 | 32.03 |
| CDY47392 | Canola | nucleus | 32.8 | 32.03 |
| Bra014659.1-P | Field mustard | nucleus | 32.8 | 32.03 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 32.0 | 32.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.6 | 31.98 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 31.2 | 31.97 |
| CDY14758 | Canola | nucleus | 30.4 | 31.93 |
| CDY06938 | Canola | nucleus | 30.4 | 31.93 |
| AT5G04150.1 | Thale cress | nucleus | 33.2 | 31.92 |
| CDY68089 | Canola | nucleus | 32.0 | 31.87 |
| CDX85121 | Canola | nucleus | 31.2 | 31.71 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 30.4 | 31.67 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 32.0 | 31.62 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 32.0 | 31.62 |
| Bra016946.1-P | Field mustard | nucleus | 30.0 | 31.51 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 30.0 | 31.51 |
| CDY69684 | Canola | nucleus | 31.6 | 31.47 |
| AT3G56980.1 | Thale cress | nucleus | 32.4 | 31.4 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 30.0 | 31.25 |
| KXG34133 | Sorghum | nucleus | 30.4 | 31.15 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 30.4 | 30.89 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 30.4 | 30.89 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 31.2 | 30.83 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 29.2 | 30.67 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 28.8 | 30.25 |
| CDY06148 | Canola | nucleus | 29.6 | 29.72 |
| Os01t0952800-01 | Rice | nucleus | 29.2 | 29.55 |
| Bra007290.1-P | Field mustard | nucleus | 29.2 | 29.32 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 28.8 | 29.15 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 28.8 | 29.15 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 28.8 | 29.15 |
| CDY71118 | Canola | nucleus | 28.8 | 29.03 |
| CDX77490 | Canola | nucleus | 28.8 | 29.03 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 28.8 | 28.92 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 28.4 | 28.86 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 29.2 | 28.74 |
| CDX76027 | Canola | nucleus | 26.4 | 28.7 |
| Bra014970.1-P | Field mustard | nucleus | 28.4 | 28.63 |
| Bra003260.1-P | Field mustard | nucleus | 28.4 | 28.51 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 26.4 | 28.45 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 26.4 | 28.21 |
| CDX67670 | Canola | nucleus | 28.0 | 28.11 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 26.0 | 28.02 |
| CDX72086 | Canola | nucleus | 26.4 | 27.97 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 27.2 | 27.76 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 27.2 | 27.76 |
| CDX67671 | Canola | nucleus | 27.6 | 27.71 |
| Bra007289.1-P | Field mustard | nucleus | 27.6 | 27.71 |
| CDY06149 | Canola | nucleus | 27.6 | 27.71 |
| Bra014653.1-P | Field mustard | cytosol | 24.8 | 27.68 |
| CDX76032 | Canola | cytosol | 24.8 | 27.68 |
| CDY71388 | Canola | cytosol | 27.6 | 27.49 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 26.8 | 27.35 |
| CDX72085 | Canola | nucleus | 27.2 | 27.09 |
| CDY06147 | Canola | nucleus | 25.6 | 25.5 |
| Bra041013.1-P | Field mustard | nucleus | 25.6 | 25.5 |
| CDY47396 | Canola | mitochondrion | 29.6 | 25.08 |
| Solyc10g079660.1.1 | Tomato | nucleus | 61.2 | 21.95 |
| CDX80905 | Canola | nucleus | 32.8 | 21.08 |
| CDX76023 | Canola | cytosol | 0.4 | 3.57 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | GO:GO:0090575 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K4D2K6 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc10g079650.1 |
| EnsemblPlants:Solyc10g079650.1.1 | UniParc:UPI000276A8AA | InterPro:bHLH_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr10:+:61152265..61154304
Molecular Weight (calculated)
28630.0 Da
IEP (calculated)
6.904
GRAVY (calculated)
-0.631
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAISSPMIS TNYINFGWLL EDSNSQQINI NPMEPLHSSS RKNLQHSDSN KFDEITINGG DHHQPDQTVK KLNHNASERD RRKKINDLYS SLRSLLPPSD
101: HMKKPSIPST ISKILKYIPE LQSEVERLVQ KKEEFTSTYV FNRQKLGDFT KQKRTKGGIE NSSFVISTSK LSDKEIVVQI STLKINKGSI GEAISQLEDE
201: GLVLLNANSF ETFEDRVFYT LHFQVEGSMV VEIDMLRDKL SSYFEKEDKL
101: HMKKPSIPST ISKILKYIPE LQSEVERLVQ KKEEFTSTYV FNRQKLGDFT KQKRTKGGIE NSSFVISTSK LSDKEIVVQI STLKINKGSI GEAISQLEDE
201: GLVLLNANSF ETFEDRVFYT LHFQVEGSMV VEIDMLRDKL SSYFEKEDKL
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.