CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014658.1-P	Field mustard	nucleus	98.79	98.79
CDY47395	Canola	nucleus	83.47	93.67
CDX76031	Canola	nucleus	81.45	80.48
CDY47392	Canola	nucleus	81.45	78.91
CDX76025	Canola	nucleus	81.45	78.91
CDY47394	Canola	nucleus	81.05	78.82
CDY68089	Canola	nucleus	77.82	76.89
CDY69684	Canola	nucleus	77.82	76.89
AT3G56980.1	Thale cress	nucleus	79.44	76.36
CDX77489	Canola	cytosol, nucleus, plastid	70.16	70.73
CDX85121	Canola	nucleus	69.35	69.92
CDY06148	Canola	nucleus	68.55	68.27
CDY71118	Canola	nucleus	67.74	67.74
CDX77490	Canola	nucleus	67.34	67.34
CDY71388	Canola	cytosol	68.15	67.33
CDX72086	Canola	nucleus	63.71	66.95
CDY06149	Canola	nucleus	66.53	66.27
CDX72085	Canola	nucleus	66.94	66.14
CDX67671	Canola	nucleus	66.13	65.86
CDX67670	Canola	nucleus	65.32	65.06
CDY06147	Canola	nucleus	65.73	64.94
CDX76023	Canola	cytosol	7.26	64.29
CDX76027	Canola	nucleus	57.66	62.17
CDY06938	Canola	nucleus	54.84	57.14
CDY14758	Canola	nucleus	54.84	57.14
CDY47396	Canola	mitochondrion	67.74	56.95
CDX97997	Canola	nucleus	54.84	55.97
CDY72354	Canola	nucleus	54.84	55.97
CDY23861	Canola	cytosol, plastid	31.45	55.71
CDX76032	Canola	cytosol	50.0	55.36
KRG95137	Soybean	cytosol, nucleus, plastid	21.37	45.3
VIT_13s0047g00450.t01	Wine grape	nucleus	40.32	44.44
VIT_08s0007g05300.t01	Wine grape	nucleus	41.94	42.45
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	39.92	41.08
KRH66814	Soybean	nucleus	39.52	40.66
KRH66812	Soybean	cytosol, nucleus, plastid	38.31	39.42
PGSC0003DMT400076759	Potato	nucleus	25.81	35.56
Zm00001d042062_P001	Maize	nucleus	30.65	34.23
Solyc10g079680.1.1	Tomato	nucleus	25.81	33.16
Solyc10g079650.1.1	Tomato	nucleus	33.06	32.8
Zm00001d011847_P001	Maize	nucleus	30.24	32.75
GSMUA_Achr8P22120_001	Banana	nucleus	31.05	32.08
TraesCS3B01G549700.1	Wheat	nucleus	27.02	32.06
TraesCS2B01G543800.1	Wheat	nucleus	32.26	32.0
GSMUA_AchrUn_...	Banana	nucleus	31.85	31.98
TraesCS3B01G550200.2	Wheat	nucleus	31.45	31.58
TraesCS2A01G515300.1	Wheat	nucleus	31.85	31.23
KXG34133	Sorghum	nucleus	30.65	31.15
TraesCS2B01G543700.1	Wheat	nucleus	30.65	31.15
HORVU2Hr1G114070.1	Barley	nucleus	31.45	30.83
TraesCS3D01G495700.1	Wheat	nucleus	30.65	30.77
TraesCS3A01G489700.1	Wheat	nucleus	30.65	30.77
TraesCS3D01G495400.1	Wheat	nucleus	29.44	30.67
HORVU3Hr1G108680.1	Barley	nucleus	30.24	30.49
PGSC0003DMT400076775	Potato	cytosol	12.9	30.48
TraesCS2D01G517000.1	Wheat	nucleus	31.05	30.43
Os01t0952800-01	Rice	nucleus	30.24	30.36
TraesCS3A01G489500.1	Wheat	nucleus	29.03	30.25
TraesCS3B01G549800.1	Wheat	nucleus	29.03	30.25
HORVU3Hr1G108670.2	Barley	nucleus	29.03	30.0
TraesCS3D01G495600.1	Wheat	nucleus	29.44	29.8
TraesCS3A01G489600.1	Wheat	nucleus	29.44	29.8
TraesCS3B01G550000.1	Wheat	nucleus	29.03	29.39
TraesCS3A01G489400.1	Wheat	nucleus	27.42	29.31
TraesCS3D01G495300.1	Wheat	nucleus	27.42	29.06
TraesCS7B01G321400.1	Wheat	nucleus	29.03	28.92
HORVU3Hr1G108660.1	Barley	nucleus	26.61	28.45
TraesCS7A01G421000.1	Wheat	nucleus	28.63	27.95
CDX80905	Canola	nucleus	34.68	22.11
Solyc10g079660.1.1	Tomato	nucleus	38.71	13.77

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078CFW4	EnsemblPlants:CDX76026
ProteinID:CDX76026	ProteinID:CDX76026.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00126250001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EF1790	InterPro:bHLH_dom	SEG:seg	:

Description

BnaA04g02900D

Coordinates

chrLK031806:-:261828..262663

Molecular Weight (calculated)

27961.3 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.318

Length

248 amino acids

Sequence
(BLAST)

001: MCALVPPFFP NFGWPSTGEY ESYYLSGENL DNCTFFDFPV PETYGLVHQQ NSLGVSISSA GIGIDKSPVV NKKLKHNASE RDRRKKINSL FSSLRSCLPA
101: SDQSKKLSIP QTVSRSLKYI LELQEEVKML IQKKEELLVR VSGQRAIEQQ PKVVAHYVST VSATRLGDHE MMVQISSSKI NNFSISNVLS GLEEDGFVLV
201: DVSLSRSQGE RVFYTLHLQV DNIDNDKLNC TELSQRMLYL YEECGNSY

Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)

001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN

Arabidopsis Description

ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.