Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000495.1-P | |
| Bra011972.1-P | |
| Bra034392.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56980.1 | Bra000495.1-P | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Bra011972.1-P | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Bra034392.1-P | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76031 | Canola | nucleus | 100.0 | 100.0 |
| Bra014658.1-P | Field mustard | nucleus | 80.08 | 81.05 |
| Bra014657.1-P | Field mustard | nucleus | 78.49 | 78.49 |
| Bra014659.1-P | Field mustard | nucleus | 77.29 | 75.78 |
| AT3G56980.1 | Thale cress | nucleus | 75.3 | 73.26 |
| Bra003261.1-P | Field mustard | mitochondrion | 52.99 | 72.28 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 67.33 | 68.7 |
| Bra007290.1-P | Field mustard | nucleus | 67.33 | 67.87 |
| Bra003260.1-P | Field mustard | nucleus | 66.93 | 67.47 |
| Bra007289.1-P | Field mustard | nucleus | 65.34 | 65.86 |
| Bra014970.1-P | Field mustard | nucleus | 63.35 | 64.11 |
| Bra041013.1-P | Field mustard | nucleus | 62.15 | 62.15 |
| Bra016946.1-P | Field mustard | nucleus | 52.19 | 55.04 |
| Bra014653.1-P | Field mustard | cytosol | 49.0 | 54.91 |
| Bra004609.1-P | Field mustard | nucleus | 52.99 | 54.73 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 40.24 | 44.89 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 20.72 | 44.44 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 40.64 | 41.63 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 39.44 | 41.08 |
| KRH66814 | Soybean | nucleus | 37.05 | 38.59 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 35.86 | 37.34 |
| PGSC0003DMT400076759 | Potato | nucleus | 24.7 | 34.44 |
| Solyc10g079680.1.1 | Tomato | nucleus | 25.9 | 33.68 |
| Zm00001d042062_P001 | Maize | nucleus | 29.48 | 33.33 |
| Solyc10g079650.1.1 | Tomato | nucleus | 32.27 | 32.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.87 | 32.39 |
| Zm00001d011847_P001 | Maize | nucleus | 29.48 | 32.31 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 30.68 | 32.08 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 30.68 | 31.17 |
| KXG34133 | Sorghum | nucleus | 30.28 | 31.15 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 25.5 | 30.62 |
| PGSC0003DMT400076775 | Potato | cytosol | 12.75 | 30.48 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 29.88 | 30.36 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 29.88 | 30.36 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 28.69 | 30.25 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 29.48 | 30.2 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 29.48 | 30.2 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 29.08 | 29.92 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 28.29 | 29.83 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 28.29 | 29.83 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 29.08 | 29.8 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 29.08 | 29.67 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 28.29 | 29.58 |
| Os01t0952800-01 | Rice | nucleus | 29.08 | 29.55 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 29.08 | 29.2 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 29.08 | 28.85 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 28.69 | 28.46 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 26.29 | 28.45 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 26.29 | 28.45 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 26.29 | 28.21 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 27.89 | 27.67 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 27.09 | 27.31 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 27.09 | 26.77 |
| Solyc10g079660.1.1 | Tomato | nucleus | 37.45 | 13.49 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra014654 | EnsemblPlants:Bra014654.1 |
| EnsemblPlants:Bra014654.1-P | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M4DDT5 |
| InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00025445A2 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
AT3G56970 (E=4e-097) BHLH038, ORG2 | BHLH038; DNA binding / transcription factor
Coordinates
chrA04:+:2039580..2040422
Molecular Weight (calculated)
28727.4 Da
IEP (calculated)
9.262
GRAVY (calculated)
-0.427
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MCALVPPLFR NFGWSLTGEY ESYYGGGDHL TNGTIFDFPE TFGVVHQQNR LWVSVSSEGI GIDKNPVVTK KLKHNASERD RRKKINSLFS SLRSCLPASD
101: QSKKLSIPQT VSRSLKYIPE LQEEVKKLIQ KKEEFLVRVS GQRDIEHHVK QQPKVVARYV STVSVTRLGD NKVMVQISSS KIHSFSISNV LSGLEEDGFV
201: LVDVSSPRSH DERLFYTLHL QMGYIDYKMN CTELSQRILY LYEECGNSFR R
101: QSKKLSIPQT VSRSLKYIPE LQEEVKKLIQ KKEEFLVRVS GQRDIEHHVK QQPKVVARYV STVSVTRLGD NKVMVQISSS KIHSFSISNV LSGLEEDGFV
201: LVDVSSPRSH DERLFYTLHL QMGYIDYKMN CTELSQRILY LYEECGNSFR R
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.