Factsheet for GSMUA_Achr10P23370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P16000_001	Banana	nucleus	81.02	42.69
GSMUA_Achr6P30900_001	Banana	nucleus	46.72	30.48
GSMUA_Achr4P12700_001	Banana	nucleus	48.91	22.71
GSMUA_Achr1P26300_001	Banana	nucleus	29.2	16.74
GSMUA_Achr6P08070_001	Banana	nucleus	26.28	16.51
GSMUA_AchrUn_...	Banana	nucleus	27.74	16.03
GSMUA_Achr7P03930_001	Banana	nucleus	27.74	16.03
GSMUA_Achr6P27600_001	Banana	nucleus	34.31	15.46
GSMUA_Achr8P34120_001	Banana	nucleus	29.93	14.34
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	26.28	12.29
GSMUA_Achr3P00640_001	Banana	nucleus	24.82	11.41
KRH63854	Soybean	nucleus	33.58	9.89
KRH54112	Soybean	nucleus	32.85	9.74
GSMUA_Achr1P07330_001	Banana	nucleus	27.74	9.0
TraesCS4B01G051500.2	Wheat	nucleus	31.39	8.69
PGSC0003DMT400074075	Potato	nucleus	33.58	8.68
Solyc06g068870.2.1	Tomato	nucleus	33.58	8.66
TraesCS4A01G263300.2	Wheat	nucleus	30.66	8.61
TraesCS4D01G051600.2	Wheat	nucleus	31.39	8.6
GSMUA_AchrUn_...	Banana	nucleus	20.44	8.46
GSMUA_Achr11P...	Banana	nucleus	32.12	8.37
GSMUA_Achr10P...	Banana	nucleus	30.66	8.14
GSMUA_Achr10P...	Banana	nucleus	29.93	8.06
VIT_01s0244g00130.t01	Wine grape	nucleus	29.93	7.95
GSMUA_Achr6P08060_001	Banana	nucleus	21.9	7.92
CDX97028	Canola	cytosol, plastid, vacuole	0.73	1.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P23370_001	EnsemblPlants:GSMUA_Achr10T23370_001	EnsemblPlantsGene:GSMUA_Achr10G23370_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR31945	PANTHER:PTHR31945:SF26	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000294C4CD	UniProt:M0RKR2	MapMan:15.5.32	:

Description

Transcription factor bHLH27 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23370_001]

Coordinates

chr10:-:28165786..28166688

Molecular Weight (calculated)

16030.0 Da

IEP (calculated)

9.243

GRAVY (calculated)

-0.986

Length

137 amino acids

Sequence
(BLAST)

001: MEDMEAEYSL YWETKRFIDS EELESWGFEE AISGGYYDSS SPEGTTSSTT AKNIAMERNR RKKLNEKLYA LRSVVPNITK MDKASIIKDA IDYIKQLQEQ
101: EKVMLAEISE LEGRRSEPRR APRLRVPQAR RPSKYRK

Best Arabidopsis Sequence Match ( AT5G57150.5 )
(BLAST)

001: MEDIVDQELS NYWEPSSFLQ NEDFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIEGLQ
101: YEEKKLEAEI RELESTPKSS LSFSKDFDRD LLVPVTSKKM KQLDSGSSTS LIEVLELKVT FMGERTMVVS VTCNKRTDTM VKLCEVFESL NLKILTSNLT
201: SFSGMIFHTV FIEFILALQF IC

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.