Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65719 | Canola | nucleus | 99.0 | 99.0 |
| Bra027958.1-P | Field mustard | nucleus | 90.03 | 92.81 |
| CDY37634 | Canola | nucleus | 35.22 | 46.49 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 43.85 | 40.87 |
| KRG96858 | Soybean | nucleus | 42.52 | 38.55 |
| KRG92821 | Soybean | nucleus | 41.2 | 37.8 |
| CDY41479 | Canola | nucleus | 35.88 | 37.76 |
| CDY12528 | Canola | nucleus | 34.88 | 37.23 |
| KRH33976 | Soybean | nucleus | 40.86 | 37.05 |
| CDX68274 | Canola | nucleus | 39.87 | 37.04 |
| CDY50447 | Canola | nucleus | 39.87 | 37.04 |
| Solyc01g098720.2.1 | Tomato | nucleus | 40.2 | 36.89 |
| CDY21365 | Canola | nucleus | 36.88 | 36.88 |
| CDX91680 | Canola | nucleus | 34.88 | 36.71 |
| KRH68589 | Soybean | nucleus | 41.53 | 36.44 |
| CDY04811 | Canola | nucleus | 36.21 | 36.21 |
| CDY46652 | Canola | nucleus | 33.89 | 36.17 |
| CDX96382 | Canola | nucleus | 38.87 | 36.0 |
| CDX72877 | Canola | nucleus | 38.87 | 35.67 |
| PGSC0003DMT400073574 | Potato | nucleus | 39.87 | 35.61 |
| CDY03650 | Canola | nucleus | 37.87 | 34.97 |
| CDX82171 | Canola | nucleus | 37.54 | 34.66 |
| CDY63053 | Canola | nucleus | 35.55 | 33.02 |
| CDX77682 | Canola | nucleus | 35.22 | 32.72 |
| CDY03201 | Canola | cytosol | 18.94 | 31.49 |
| CDY35175 | Canola | nucleus | 30.56 | 31.29 |
| CDY51710 | Canola | nucleus | 30.9 | 29.9 |
| CDY24717 | Canola | nucleus | 19.6 | 29.35 |
| CDY07143 | Canola | nucleus | 29.9 | 29.03 |
| CDY05233 | Canola | nucleus | 19.6 | 28.92 |
| CDY37820 | Canola | nucleus | 20.93 | 28.9 |
| CDY11386 | Canola | nucleus | 26.58 | 28.67 |
| CDY18843 | Canola | nucleus | 18.94 | 28.36 |
| CDY58338 | Canola | nucleus | 19.27 | 28.02 |
| CDY08066 | Canola | nucleus | 19.27 | 28.02 |
| CDY33966 | Canola | nucleus | 27.91 | 27.81 |
| CDY41561 | Canola | nucleus | 27.91 | 26.92 |
| CDX80049 | Canola | nucleus | 27.91 | 26.84 |
| CDY27521 | Canola | nucleus | 26.91 | 26.13 |
| CDY48013 | Canola | nucleus | 27.57 | 26.1 |
| CDX76598 | Canola | nucleus | 27.24 | 26.03 |
| CDY68483 | Canola | nucleus | 26.91 | 25.31 |
| CDY55926 | Canola | nucleus | 26.58 | 24.77 |
| CDY55929 | Canola | nucleus | 25.25 | 22.75 |
| CDX77460 | Canola | nucleus | 26.91 | 22.75 |
| CDX85167 | Canola | nucleus | 29.24 | 22.62 |
| CDX92996 | Canola | nucleus | 30.23 | 22.47 |
| CDX94841 | Canola | nucleus | 29.9 | 22.06 |
| CDY18083 | Canola | nucleus | 25.58 | 20.05 |
| CDY19692 | Canola | nucleus | 22.92 | 19.55 |
| CDY14397 | Canola | nucleus | 22.92 | 19.44 |
| CDY38734 | Canola | nucleus | 22.59 | 19.26 |
| CDY47059 | Canola | nucleus | 22.26 | 19.2 |
| CDY64587 | Canola | nucleus | 23.59 | 19.14 |
| CDX96201 | Canola | nucleus | 21.26 | 18.18 |
Protein Annotations
| EnsemblPlants:CDY41734 | EnsemblPlantsGene:GSBRNA2T00073452001 | Gene3D:4.10.280.10 | GO:A0A078HWF9 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY41734 | ProteinID:CDY41734.1 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEA1EA | UniProt:A0A078HWF9 | MapMan:15.5.32 | : |
Description
BnaA09g15620DBnaA09g15620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWF9]
Coordinates
chrLK032504:-:244066..247183
Molecular Weight (calculated)
33872.1 Da
IEP (calculated)
5.820
GRAVY (calculated)
-0.371
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEGAISQC SYNGKEAYSN IYTDNEPPFS DLQAALCFLD NQTDNYDSTF LQEGYYGNTT TFLHQPPNEI VINEEKPAAN CDISFHGDMG KNQVTRRTRA
101: KKNKEEISNQ RMTHIAVERN RRRQMNEYLS VLRSLMPESY VQRCDQASTV GGAINFIREL EHRLHLQNLS CETNETSLSG SCMSSATPFS DTFKLPQFSM
201: GSSSVSDNMV LEVNALADIE VSLVESHATL KIRSRRRPKV LLNMVSGLQN LGFIILHLNV STVSDFVLYC FSTKLEDCCK LSSVADISTA VYEMLKMHHD
301: S
101: KKNKEEISNQ RMTHIAVERN RRRQMNEYLS VLRSLMPESY VQRCDQASTV GGAINFIREL EHRLHLQNLS CETNETSLSG SCMSSATPFS DTFKLPQFSM
201: GSSSVSDNMV LEVNALADIE VSLVESHATL KIRSRRRPKV LLNMVSGLQN LGFIILHLNV STVSDFVLYC FSTKLEDCCK LSSVADISTA VYEMLKMHHD
301: S
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.