Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41734 | Canola | nucleus | 99.0 | 99.0 |
| Bra027958.1-P | Field mustard | nucleus | 89.7 | 92.47 |
| CDY37634 | Canola | nucleus | 35.55 | 46.93 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 44.19 | 41.18 |
| KRG96858 | Soybean | nucleus | 42.86 | 38.86 |
| CDY41479 | Canola | nucleus | 36.21 | 38.11 |
| KRG92821 | Soybean | nucleus | 41.53 | 38.11 |
| KRH33976 | Soybean | nucleus | 41.2 | 37.35 |
| CDX68274 | Canola | nucleus | 40.2 | 37.35 |
| CDY50447 | Canola | nucleus | 40.2 | 37.35 |
| CDY12528 | Canola | nucleus | 34.88 | 37.23 |
| CDY21365 | Canola | nucleus | 37.21 | 37.21 |
| Solyc01g098720.2.1 | Tomato | nucleus | 40.53 | 37.2 |
| CDX91680 | Canola | nucleus | 35.22 | 37.06 |
| KRH68589 | Soybean | nucleus | 41.86 | 36.73 |
| CDY04811 | Canola | nucleus | 36.54 | 36.54 |
| CDX96382 | Canola | nucleus | 39.2 | 36.31 |
| CDY46652 | Canola | nucleus | 33.89 | 36.17 |
| CDX72877 | Canola | nucleus | 39.2 | 35.98 |
| PGSC0003DMT400073574 | Potato | nucleus | 40.2 | 35.91 |
| CDY03650 | Canola | nucleus | 38.21 | 35.28 |
| CDX82171 | Canola | nucleus | 37.87 | 34.97 |
| CDY63053 | Canola | nucleus | 35.88 | 33.33 |
| CDX77682 | Canola | nucleus | 35.55 | 33.02 |
| CDY03201 | Canola | cytosol | 18.94 | 31.49 |
| CDY35175 | Canola | nucleus | 30.56 | 31.29 |
| CDY51710 | Canola | nucleus | 31.23 | 30.23 |
| CDY37820 | Canola | nucleus | 21.26 | 29.36 |
| CDY07143 | Canola | nucleus | 30.23 | 29.35 |
| CDY24717 | Canola | nucleus | 19.6 | 29.35 |
| CDY11386 | Canola | nucleus | 26.91 | 29.03 |
| CDY05233 | Canola | nucleus | 19.6 | 28.92 |
| CDY18843 | Canola | nucleus | 18.94 | 28.36 |
| CDY33966 | Canola | nucleus | 28.24 | 28.15 |
| CDY08066 | Canola | nucleus | 19.27 | 28.02 |
| CDY58338 | Canola | nucleus | 19.27 | 28.02 |
| CDY41561 | Canola | nucleus | 27.91 | 26.92 |
| CDX80049 | Canola | nucleus | 27.91 | 26.84 |
| CDY27521 | Canola | nucleus | 27.24 | 26.45 |
| CDY48013 | Canola | nucleus | 27.91 | 26.42 |
| CDX76598 | Canola | nucleus | 27.57 | 26.35 |
| CDY68483 | Canola | nucleus | 27.24 | 25.62 |
| CDY55926 | Canola | nucleus | 26.91 | 25.08 |
| CDY55929 | Canola | nucleus | 25.58 | 23.05 |
| CDX85167 | Canola | nucleus | 29.57 | 22.88 |
| CDX77460 | Canola | nucleus | 26.91 | 22.75 |
| CDX92996 | Canola | nucleus | 30.56 | 22.72 |
| CDX94841 | Canola | nucleus | 30.23 | 22.3 |
| CDY19692 | Canola | nucleus | 23.26 | 19.83 |
| CDY18083 | Canola | nucleus | 25.25 | 19.79 |
| CDY14397 | Canola | nucleus | 23.26 | 19.72 |
| CDY38734 | Canola | nucleus | 22.92 | 19.55 |
| CDY47059 | Canola | nucleus | 22.59 | 19.48 |
| CDY64587 | Canola | nucleus | 23.26 | 18.87 |
| CDX96201 | Canola | nucleus | 21.26 | 18.18 |
Protein Annotations
| EnsemblPlants:CDY65719 | EnsemblPlantsGene:GSBRNA2T00048074001 | Gene3D:4.10.280.10 | GO:A0A078JGA7 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY65719 | ProteinID:CDY65719.1 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF1D2B | UniProt:A0A078JGA7 | MapMan:15.5.32 | : |
Description
BnaC09g51650DBnaC09g51650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGA7]
Coordinates
chrLK034914:-:13910..17075
Molecular Weight (calculated)
33802.0 Da
IEP (calculated)
6.037
GRAVY (calculated)
-0.358
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEGAISQC SYNGKEAYSN IYTDNEPPFS DLQAALCFLD NQTDNYDSTF LQEGYYGNTT TFLHQPPNEI VINEEKPAAN CDISFHGDMG KNQVTRRTRA
101: KKNKEEISNQ RMTHIAVERN RRRQMNEYLS VLRSLMPESY VQRCDQASTV GGAINFIREL EHRLHLQNLS CETNETSLSG SCMSSATPFS DTFKLPQFSM
201: GSSSVSDNMV LGVNALADIE VSLVESHATL KIRSRRRPKV LLNMVSGLQN LGFIILHLNV STVSDFVLYC FSTKMEDCCK LSSVADIATA VYEMLKMHHD
301: S
101: KKNKEEISNQ RMTHIAVERN RRRQMNEYLS VLRSLMPESY VQRCDQASTV GGAINFIREL EHRLHLQNLS CETNETSLSG SCMSSATPFS DTFKLPQFSM
201: GSSSVSDNMV LGVNALADIE VSLVESHATL KIRSRRRPKV LLNMVSGLQN LGFIILHLNV STVSDFVLYC FSTKMEDCCK LSSVADIATA VYEMLKMHHD
301: S
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.