Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19692 | Canola | nucleus | 95.49 | 96.03 |
| CDY38734 | Canola | nucleus | 87.61 | 88.1 |
| CDY47059 | Canola | nucleus | 86.2 | 87.68 |
| AT5G53210.1 | Thale cress | nucleus | 89.58 | 87.36 |
| CDX96201 | Canola | nucleus | 83.94 | 84.66 |
| Bra003073.1-P | Field mustard | nucleus | 94.08 | 77.14 |
| KRH18131 | Soybean | nucleus | 58.59 | 61.9 |
| KRH64504 | Soybean | nucleus | 59.72 | 61.63 |
| KRH53438 | Soybean | nucleus | 59.72 | 60.74 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 57.75 | 60.65 |
| KRH16521 | Soybean | nucleus | 55.77 | 59.82 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 46.48 | 58.3 |
| GSMUA_Achr10P... | Banana | nucleus | 41.69 | 56.7 |
| Solyc03g007410.2.1 | Tomato | nucleus | 52.68 | 55.99 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 48.45 | 55.31 |
| PGSC0003DMT400023497 | Potato | nucleus | 54.37 | 54.37 |
| CDY24717 | Canola | nucleus | 27.89 | 49.25 |
| CDY05233 | Canola | nucleus | 27.89 | 48.53 |
| CDY18843 | Canola | nucleus | 27.32 | 48.26 |
| CDY08066 | Canola | nucleus | 27.89 | 47.83 |
| CDY58338 | Canola | nucleus | 27.89 | 47.83 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 47.32 | 46.15 |
| TraesCS7A01G350900.1 | Wheat | nucleus | 47.04 | 45.88 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 47.04 | 45.75 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 46.76 | 45.6 |
| EER88428 | Sorghum | nucleus | 47.04 | 43.95 |
| Zm00001d046096_P001 | Maize | nucleus | 41.69 | 42.77 |
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 45.07 | 42.67 |
| EES06610 | Sorghum | nucleus | 47.04 | 41.96 |
| Zm00001d016095_P001 | Maize | nucleus | 45.63 | 41.22 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 43.66 | 39.24 |
| Os02t0257500-00 | Rice | nucleus | 45.63 | 39.04 |
| CDY37634 | Canola | nucleus | 21.69 | 33.77 |
| CDX85167 | Canola | nucleus | 31.27 | 28.53 |
| CDX77460 | Canola | nucleus | 28.45 | 28.37 |
| CDY41479 | Canola | nucleus | 22.82 | 28.32 |
| CDX92996 | Canola | nucleus | 32.11 | 28.15 |
| CDX94841 | Canola | nucleus | 31.83 | 27.7 |
| CDY51710 | Canola | nucleus | 23.94 | 27.33 |
| CDX91680 | Canola | nucleus | 21.97 | 27.27 |
| CDY03201 | Canola | cytosol | 13.8 | 27.07 |
| CDY07143 | Canola | nucleus | 23.38 | 26.77 |
| CDY21365 | Canola | nucleus | 22.25 | 26.25 |
| CDY04811 | Canola | nucleus | 22.25 | 26.25 |
| CDY46652 | Canola | nucleus | 20.85 | 26.24 |
| CDY12528 | Canola | nucleus | 20.85 | 26.24 |
| CDY11386 | Canola | nucleus | 20.56 | 26.16 |
| CDY37820 | Canola | nucleus | 16.06 | 26.15 |
| CDY18083 | Canola | nucleus | 27.89 | 25.78 |
| CDY64587 | Canola | nucleus | 26.48 | 25.34 |
| CDY35175 | Canola | nucleus | 20.56 | 24.83 |
| CDX77682 | Canola | nucleus | 22.54 | 24.69 |
| CDY63053 | Canola | nucleus | 22.54 | 24.69 |
| CDX72877 | Canola | nucleus | 22.54 | 24.39 |
| CDY03650 | Canola | nucleus | 22.25 | 24.23 |
| CDX82171 | Canola | nucleus | 22.25 | 24.23 |
| CDX68274 | Canola | nucleus | 21.97 | 24.07 |
| CDY50447 | Canola | nucleus | 21.97 | 24.07 |
| CDX96382 | Canola | nucleus | 21.97 | 24.0 |
| CDX80049 | Canola | nucleus | 20.85 | 23.64 |
| CDY27521 | Canola | nucleus | 20.56 | 23.55 |
| CDY33966 | Canola | nucleus | 20.0 | 23.51 |
| CDY41561 | Canola | nucleus | 20.56 | 23.4 |
| CDY65719 | Canola | nucleus | 19.72 | 23.26 |
| CDX76598 | Canola | nucleus | 20.56 | 23.17 |
| CDY41734 | Canola | nucleus | 19.44 | 22.92 |
| CDY68483 | Canola | nucleus | 20.56 | 22.81 |
| CDY48013 | Canola | nucleus | 20.28 | 22.64 |
| CDY55926 | Canola | nucleus | 20.28 | 22.29 |
| CDY55929 | Canola | nucleus | 18.03 | 19.16 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078FND9 | UniProt:A0A078FND9 | EnsemblPlants:CDY14397 | ProteinID:CDY14397 |
| ProteinID:CDY14397.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00079046001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE02E4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g06580DBnaA10g06580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FND9]
Coordinates
chrLK032042:+:770327..772589
Molecular Weight (calculated)
39225.4 Da
IEP (calculated)
4.786
GRAVY (calculated)
-0.548
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MQETILDFLE ECEFVDTSLA GDDLFAILES LEGAGEISST AASTPKDGTT SSKELVKNQN HETSSPKKKR KRLETGKEEE DDDDGEGEEE EEDDEDNKQD
101: GQQKMSHVNV ERNRRKQMNE HLIVLRSLMP CFYVKRGDQA SIIGGVVEYI NELQQVLQSL EAKKQRKTYA EVLSPRLVPS PRPSPNVLSP RKPPLSPRIS
201: HHHLLLPPIS PRTPLPTSPY GAHPPQLPLI PQPPRSYCLG DPPPYSPASS SSSPSVSSNH ESSLINELVA NSKSALADVE VKFSGANVLL KTVSHKIPGQ
301: VMKIIAALED LSLEILQVNI NTVEETMLYS FTIKIGVECQ LSAEELAQQI QQTFC
101: GQQKMSHVNV ERNRRKQMNE HLIVLRSLMP CFYVKRGDQA SIIGGVVEYI NELQQVLQSL EAKKQRKTYA EVLSPRLVPS PRPSPNVLSP RKPPLSPRIS
201: HHHLLLPPIS PRTPLPTSPY GAHPPQLPLI PQPPRSYCLG DPPPYSPASS SSSPSVSSNH ESSLINELVA NSKSALADVE VKFSGANVLL KTVSHKIPGQ
301: VMKIIAALED LSLEILQVNI NTVEETMLYS FTIKIGVECQ LSAEELAQQI QQTFC
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.