Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G350900.1 | Wheat | nucleus | 96.71 | 96.98 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 95.62 | 95.88 |
| TraesCS7D01G327900.1 | Wheat | nucleus | 95.07 | 95.33 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 66.58 | 61.52 |
| Zm00001d046096_P001 | Maize | nucleus | 57.26 | 60.4 |
| EER88428 | Sorghum | nucleus | 62.74 | 60.26 |
| GSMUA_Achr10P... | Banana | nucleus | 38.63 | 54.02 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 41.64 | 53.71 |
| KRH64504 | Soybean | nucleus | 49.04 | 52.03 |
| Solyc03g007410.2.1 | Tomato | nucleus | 47.12 | 51.5 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 47.67 | 51.48 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 43.84 | 51.45 |
| KRH53438 | Soybean | nucleus | 49.04 | 51.29 |
| KRH18131 | Soybean | nucleus | 47.12 | 51.19 |
| KRH16521 | Soybean | nucleus | 46.3 | 51.06 |
| CDY47059 | Canola | nucleus | 47.67 | 49.86 |
| PGSC0003DMT400023497 | Potato | nucleus | 47.95 | 49.3 |
| CDY38734 | Canola | nucleus | 47.4 | 49.01 |
| AT5G53210.1 | Thale cress | nucleus | 47.67 | 47.8 |
| CDY19692 | Canola | nucleus | 45.75 | 47.31 |
| CDY14397 | Canola | nucleus | 45.75 | 47.04 |
| Bra029088.1-P | Field mustard | nucleus | 43.01 | 46.73 |
| Bra022638.1-P | Field mustard | nucleus | 43.01 | 44.86 |
| CDX96201 | Canola | nucleus | 43.01 | 44.6 |
| HORVU2Hr1G020990.1 | Barley | nucleus | 27.12 | 41.6 |
| HORVU2Hr1G106030.2 | Barley | cytosol, mitochondrion, nucleus | 11.51 | 40.78 |
| Bra003073.1-P | Field mustard | nucleus | 42.74 | 36.03 |
| HORVU4Hr1G084850.2 | Barley | extracellular | 17.81 | 21.45 |
| HORVU1Hr1G071330.3 | Barley | nucleus | 25.21 | 21.1 |
| HORVU6Hr1G067000.2 | Barley | nucleus | 20.0 | 21.04 |
| HORVU6Hr1G081120.4 | Barley | nucleus | 19.73 | 20.81 |
| HORVU4Hr1G078270.2 | Barley | plastid | 19.18 | 15.84 |
| HORVU5Hr1G070000.3 | Barley | nucleus, plastid | 20.0 | 15.47 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0010374 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU7Hr1G079250 | EnsemblPlants:HORVU7Hr1G079250.1 |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0WT48 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF97 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294EFDD | InterPro:bHLH_dom | SEG:seg |
Description
No Description!
Coordinates
chrchr7H:+:466520320..466523191
Molecular Weight (calculated)
38967.6 Da
IEP (calculated)
7.531
GRAVY (calculated)
-0.302
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDALCDQLL VDVDGEFQLP TDAEDLFSIL ETWEDCVNGA AAALSPTAGA GSGGGLLGGS APGNKGSSKR RARQGECDGI SHEHKRQKCS PEEGGGAAPK
101: TAHITVERNR RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVKQSLEAKK QRKAYTEHVL SPRPPPSSYS PRLPLSPLHK STPPLSPLLR
201: STPPLSPRLA VPISPARTPP TPGSPYKLRP LPPPISGSTY VSPAMTPTGY EPGSSYLPSL DAIAAELSVY ANRQALQLPP TDLLPDVRVE FAGANLVLKT
301: VSHRAPGQAV KIIAALESRA PALEILHAKI STIDDTDVNA FTVKIGIECS LSAEELVQEI QQTFS
101: TAHITVERNR RKQMNEHLTV LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVKQSLEAKK QRKAYTEHVL SPRPPPSSYS PRLPLSPLHK STPPLSPLLR
201: STPPLSPRLA VPISPARTPP TPGSPYKLRP LPPPISGSTY VSPAMTPTGY EPGSSYLPSL DAIAAELSVY ANRQALQLPP TDLLPDVRVE FAGANLVLKT
301: VSHRAPGQAV KIIAALESRA PALEILHAKI STIDDTDVNA FTVKIGIECS LSAEELVQEI QQTFS
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.