Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G327900.1 | Wheat | nucleus | 97.53 | 97.53 |
| TraesCS7B01G232000.1 | Wheat | cytosol | 96.98 | 96.98 |
| HORVU7Hr1G079250.1 | Barley | cytosol | 96.98 | 96.71 |
| Zm00001d046096_P001 | Maize | nucleus | 58.24 | 61.27 |
| EER88428 | Sorghum | nucleus | 63.74 | 61.05 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 65.93 | 60.76 |
| GSMUA_Achr10P... | Banana | nucleus | 39.56 | 55.17 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 42.58 | 54.77 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 44.51 | 52.09 |
| KRH64504 | Soybean | nucleus | 49.18 | 52.03 |
| Solyc03g007410.2.1 | Tomato | nucleus | 47.25 | 51.5 |
| KRH53438 | Soybean | nucleus | 49.18 | 51.29 |
| KRH18131 | Soybean | nucleus | 47.25 | 51.19 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 47.53 | 51.18 |
| KRH16521 | Soybean | nucleus | 46.43 | 51.06 |
| CDY47059 | Canola | nucleus | 47.8 | 49.86 |
| PGSC0003DMT400023497 | Potato | nucleus | 48.08 | 49.3 |
| CDY38734 | Canola | nucleus | 47.53 | 49.01 |
| AT5G53210.1 | Thale cress | nucleus | 47.8 | 47.8 |
| CDY19692 | Canola | nucleus | 45.88 | 47.31 |
| CDY14397 | Canola | nucleus | 45.88 | 47.04 |
| Bra029088.1-P | Field mustard | nucleus | 43.13 | 46.73 |
| Bra022638.1-P | Field mustard | nucleus | 43.13 | 44.86 |
| CDX96201 | Canola | nucleus | 43.13 | 44.6 |
| TraesCS2A01G120700.1 | Wheat | nucleus | 25.55 | 43.06 |
| Bra003073.1-P | Field mustard | nucleus | 42.86 | 36.03 |
| TraesCS6A01G315700.1 | Wheat | nucleus | 20.05 | 23.78 |
| TraesCS2A01G448800.1 | Wheat | nucleus | 21.43 | 23.57 |
| TraesCS4A01G404700.1 | Wheat | nucleus | 19.78 | 23.23 |
| TraesCS1A01G290800.1 | Wheat | nucleus | 26.37 | 22.86 |
| TraesCS6A01G264200.1 | Wheat | nucleus | 20.6 | 22.32 |
| TraesCS6A01G335500.1 | Wheat | nucleus | 20.88 | 21.65 |
| TraesCS5A01G248200.1 | Wheat | nucleus | 20.33 | 21.45 |
| TraesCS5A01G515800.1 | Wheat | extracellular | 17.31 | 20.79 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G350900.1 | EnsemblPlantsGene:TraesCS7A01G350900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF97 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:514435081..514437413
Molecular Weight (calculated)
38933.5 Da
IEP (calculated)
7.831
GRAVY (calculated)
-0.301
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDALCDQLL VDVDGEFQLP TDAEDLFSIL ETWEDCVNGA AAALSPTAGA SSRGGLLGGS APGNKGSKRR ARQDECDGIA QAQKRQKCSP EEGGGAAPKT
101: AHITVERNRR KQMNEHLTVL RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VKQSLEAKKQ RKAYTEHVLS PRPPPSSYSP RLPLSPLHKS TPPLSPLLRS
201: TPPLSPRLAV PISPARTPPT PGSPYKLRPL PPPISGSTYV SPAMTPTGYD AASSYLPSLD AIAAELSVYA NRQALQLPPT DPLPDVRVEF AGANLVLKTV
301: SHRAPGQAVK IIAALESRAP ALEILHAKIS TIDDTDVNAF TVKIGIECSL SAEELVQEIQ QTFS
101: AHITVERNRR KQMNEHLTVL RSLMPCFYVK RGDQASIIGG VVDYIKELQQ VKQSLEAKKQ RKAYTEHVLS PRPPPSSYSP RLPLSPLHKS TPPLSPLLRS
201: TPPLSPRLAV PISPARTPPT PGSPYKLRPL PPPISGSTYV SPAMTPTGYD AASSYLPSLD AIAAELSVYA NRQALQLPPT DPLPDVRVEF AGANLVLKTV
301: SHRAPGQAVK IIAALESRAP ALEILHAKIS TIDDTDVNAF TVKIGIECSL SAEELVQEIQ QTFS
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.