Factsheet for TraesCS4A01G404700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G302700.1	Wheat	nucleus	97.74	97.74
TraesCS4B01G304500.1	Wheat	nucleus	97.42	97.73
HORVU4Hr1G078270.2	Barley	plastid	94.19	66.06
Os03t0188400-01	Rice	nucleus	70.0	65.96
Zm00001d027987_P001	Maize	nucleus	63.55	59.52
EER95359	Sorghum	nucleus	67.74	58.82
GSMUA_Achr2P22310_001	Banana	nucleus	44.52	57.02
Zm00001d048229_P001	Maize	nucleus	65.48	56.86
GSMUA_Achr6P10290_001	Banana	nucleus	52.9	56.36
GSMUA_Achr10P...	Banana	mitochondrion	35.81	56.06
Solyc11g010340.1.1	Tomato	nucleus	45.16	46.98
VIT_07s0191g00240.t01	Wine grape	nucleus	48.06	46.27
TraesCS6A01G315700.1	Wheat	nucleus	45.48	45.93
TraesCS5A01G248200.1	Wheat	nucleus	50.97	45.8
TraesCS6A01G335500.1	Wheat	nucleus	50.32	44.44
PGSC0003DMT400041644	Potato	nucleus	33.23	43.46
TraesCS6A01G264200.1	Wheat	nucleus	43.55	40.18
TraesCS2A01G448800.1	Wheat	nucleus	41.61	38.97
CDY37820	Canola	nucleus	26.45	37.61
Bra031865.1-P	Field mustard	nucleus	25.81	36.7
CDY33966	Canola	nucleus	33.23	34.11
AT5G65320.1	Thale cress	nucleus	32.26	33.78
TraesCS2A01G120700.1	Wheat	nucleus	22.58	32.41
TraesCS5A01G515800.1	Wheat	extracellular	30.0	30.69
TraesCS1A01G290800.1	Wheat	nucleus	32.26	23.81
TraesCS7A01G350900.1	Wheat	nucleus	23.23	19.78

Protein Annotations

EnsemblPlants:TraesCS4A01G404700.1	EnsemblPlantsGene:TraesCS4A01G404700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr4A:+:678217789..678219921

Molecular Weight (calculated)

33671.8 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.397

Length

310 amino acids

Sequence
(BLAST)

001: MALEAVVFAQ GHFGYGQAPG LGPWCDMVGA GGFLEDCWDQ QLLAAPVAPN AEDQWEPVSS WDQSEASSEG KAAAPEPAMA AAATGRRKRR RTKIVKNKEE
101: VESQRRTHIA VERNRRRQMN EYLAALRSLM PQSYAQRGDQ ASIVGGAINY VKELEQLLQS LEVQKSVKNR TGRSPFASSF TFPQYSTSCN ATQATASDGG
201: SGADSSGLKS EAGVADIEVT MVEGHASLKV LSRRRPRQLL RLLAGLQQLR IPPLHLNVTT VDAMVLYSFS LKVEDGSKLS SVEDIAAAVH EILARIQREE
301: EEAGRLSSSS

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.