CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048229_P001	Maize	nucleus	84.31	84.31
Zm00001d027987_P001	Maize	nucleus	76.19	82.18
Os03t0188400-01	Rice	nucleus	65.55	71.12
TraesCS4B01G304500.1	Wheat	nucleus	59.66	68.93
TraesCS4D01G302700.1	Wheat	nucleus	59.66	68.71
TraesCS4A01G404700.1	Wheat	nucleus	58.82	67.74
GSMUA_Achr10P...	Banana	mitochondrion	32.77	59.09
GSMUA_Achr6P10290_001	Banana	nucleus	47.34	58.08
GSMUA_Achr2P22310_001	Banana	nucleus	37.82	55.79
OQU91887	Sorghum	nucleus	48.18	53.09
VIT_07s0191g00240.t01	Wine grape	nucleus	43.7	48.45
HORVU4Hr1G078270.2	Barley	plastid	59.1	47.74
Solyc11g010340.1.1	Tomato	nucleus	38.94	46.64
EER96894	Sorghum	nucleus	43.42	45.86
PGSC0003DMT400041644	Potato	nucleus	28.29	42.62
KXG30709	Sorghum	nucleus	41.46	42.29
KXG27015	Sorghum	cytosol	36.97	38.48
CDY37820	Canola	nucleus	22.97	37.61
Bra031865.1-P	Field mustard	nucleus	22.69	37.16
EES07423	Sorghum	nucleus	33.89	34.67
CDY33966	Canola	nucleus	29.13	34.44
AT5G65320.1	Thale cress	nucleus	28.29	34.12
KXG27016	Sorghum	cytosol, nucleus, plastid	32.21	33.24
KXG22733	Sorghum	nucleus	21.85	32.77
OQU93358	Sorghum	nucleus	28.01	30.96
KXG22636	Sorghum	nucleus	30.25	23.63
EER88428	Sorghum	nucleus	22.69	21.32
EES06610	Sorghum	nucleus	22.69	20.35

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8081994	UniProt:C5WUU8	EnsemblPlants:EER95359	ProteinID:EER95359
ProteinID:EER95359.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF24
SMART:SM00353	EnsemblPlantsGene:SORBI_3001G476500	SUPFAM:SSF47459	UniParc:UPI0001A82E0F	RefSeq:XP_002468361.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:74879932..74882039

Molecular Weight (calculated)

37677.2 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.309

Length

357 amino acids

Sequence
(BLAST)

001: MALEAVVFSQ PQAAGHFGYA MPWCDLQLLQ GGGGGGGGGG GFGDLCAAAG EWDHDLDTCW AAPTMAAVGG DDWDWEALSR DQSSDASTDH GNSRKAAVAP
101: EPAAAAAGRR KRRRTKVVKN KEEIESQRMT HIAVERNRRR QMNEYLAVLR SLMPPSYAHR GDQASIVGGA INYVRELEQL LQSLEVQKSI KSRGSSAGST
201: DAGSSSSPFA GFFSFPQYST TTSAHGGGCS GNTSNGGNCS DAVAAASAAG SAETGCRRPA AAAVADIEVT MVEGHASLKV LARRRPKQLL KLVAGLHQLR
301: IPPLHLNMTT VDAMVLYTFS LKVEDDSKMG SVEDIATAVH EILGSIQQQQ EEETAVM

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.