Factsheet for Zm00001d048229_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95359	Sorghum	nucleus	84.31	84.31
Zm00001d027987_P001	Maize	nucleus	74.79	80.66
Os03t0188400-01	Rice	nucleus	63.87	69.3
TraesCS4D01G302700.1	Wheat	nucleus	57.7	66.45
TraesCS4B01G304500.1	Wheat	nucleus	57.42	66.34
TraesCS4A01G404700.1	Wheat	nucleus	56.86	65.48
GSMUA_Achr10P...	Banana	mitochondrion	31.09	56.06
GSMUA_Achr6P10290_001	Banana	nucleus	45.66	56.01
Zm00001d031260_P001	Maize	nucleus	33.61	55.56
GSMUA_Achr2P22310_001	Banana	nucleus	36.97	54.55
VIT_07s0191g00240.t01	Wine grape	nucleus	42.3	46.89
HORVU4Hr1G078270.2	Barley	plastid	57.7	46.61
Zm00001d020790_P001	Maize	nucleus	43.14	46.39
Solyc11g010340.1.1	Tomato	nucleus	38.38	45.97
Zm00001d005939_P001	Maize	nucleus	42.3	45.35
PGSC0003DMT400041644	Potato	nucleus	28.29	42.62
Zm00001d018119_P001	Maize	nucleus	41.74	42.33
Zm00001d052192_P001	Maize	nucleus	40.9	42.32
Zm00001d002492_P001	Maize	mitochondrion	20.45	41.48
Zm00001d026046_P001	Maize	nucleus	36.97	39.29
CDY37820	Canola	nucleus	22.69	37.16
Bra031865.1-P	Field mustard	nucleus	22.41	36.7
Zm00001d009778_P001	Maize	nucleus	22.13	36.07
Zm00001d051509_P001	Maize	nucleus	33.33	35.84
AT5G65320.1	Thale cress	nucleus	28.57	34.46
CDY33966	Canola	nucleus	28.85	34.11
Zm00001d017677_P001	Maize	nucleus	34.45	33.61
Zm00001d027419_P001	Maize	nucleus	28.85	33.12
Zm00001d048478_P001	Maize	nucleus	27.73	30.56
Zm00001d009715_P001	Maize	nucleus	28.29	24.16
Zm00001d053391_P001	Maize	cytosol, nucleus, plastid	23.53	22.4
Zm00001d046096_P001	Maize	nucleus	21.01	21.68
Zm00001d016095_P001	Maize	nucleus	22.13	20.1

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:AQL09154.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:K7WGI1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF24	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000221E44F	EnsemblPlantsGene:Zm00001d048229	EnsemblPlants:Zm00001d048229_P001	EnsemblPlants:Zm00001d048229_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 21Putative HLH DNA-binding domain superfamily protein

Coordinates

chr9:-:152802586..152804818

Molecular Weight (calculated)

37738.0 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.342

Length

357 amino acids

Sequence
(BLAST)

001: MALEAVVFSQ PQAAAGHFGY GRGDSTTYAV PWCDLLQGGV GGGGGGFGDL CAAGEWDLDI DTWAAAAAAA PTVELGGDDW DWEALSRDYQ SSDASTEYYH
101: GGSRKAAAAP EPAGRRKRRR AKAVKNKEEI ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP PSYAHRGDQA SIVGGAINYV RELEQLLQSL EVQKSIRSRP
201: GAGAGAADSS PFAGFFSFPQ YSATTTSAHG GCSGNNNNNT GSGGNRSDAA AAGAGAAGSS AVADVEVTMV EGHASLKVLA RRRPKQLLKL VAGLHQLRIP
301: PLHLNVTTVD AMVLYTFSLK VEDDSNMGSV EDIAAAVHEI IGSIEQQQQE EGETAVM

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.